Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi66g00060 ATGGAAAACCAGTTCTTTTTGAATGCTGGGTGTCTCATCCCTTGCACTTTGAACCTTCACCCTAATTCCTCAATGCCCACTTGGCAATCACTCTCCTCACCCATGGAAATTCAACCAACAGTTCTCAATTGTTCCTCTGAGCAAACTCAAGATTGTTTTTTACAACCCCACATGGGACAAGTCAACGGATCATCATGGTCTTCAATTGATTCTGCACTGAGAGCTGTTGGAAACTCTGATGAGATCTCACCACATTCTCAGCCTTTGGTTGTTGCTTCTTCTTACATGAATGGTGGGAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGCTCAACATTGCCCCAATGATGAACCATTTGGTGAAAGAGAATTTGCCTAAACCAATGGCTCTCAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGGAGCAGGAGTTTCAATGATAGGAGTAGCCAATTGGTTGTGAACAATGGTGAATTAGCCCAGAGATCTGCACCAGATCAAGATAGAATGGAAGTGGCAAATTCTCAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGAAAATAGGTGTGAAAACTTCCCTTGATATGAATTCCAGGAAAAGAAAGCTTTCTTCCAAAGGAAAAGCCAAAGAAGCTTCAAACACTACCAAGGGTGTTGAAGGTAGTGGAGAAGACTCAAATGCAAAGCGTAGCAAGGCAAATGAAAATGGCACAATGAAGGTTGAGGAAGAGTCCAAAGGAGGTACTACTAATGCAGGGGAAGAGAAACAGAACAAAGGTAACTCTAACTCTAAACCTCCTGAGCCACCAAAAGATTACATTCATGTTAGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGTCTTGCAGAACGTGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGTAAGGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGATATTTCAATCAAATAATTCTTTGGCAAACCCAATATTCCCTTTAGATTCCTCAGCACCAGCCTTTTATGGTCACCAGCCACAGCAAAACCCAGCTATCCATAATAACATTCCTAATAGAACCATGTCCCACACCTCAGTGGACCCATTAGATTCTTCTTTGATCCAAAATCTTGGCATGCATTTACCTCCGTTAAATGGGTTTAGTGAAGGTTCCTCTCAGTATCCATTAACATTCTGTGAAGATGACCTCCACACAATTGTTCAGATGGGATTTGGCCAAACTACAAACAGGAAAACACCAACACAGTCTCCAAGCTTCAACGGTTCAAATCAAGTACCACAAATGAAAGTTGAGCTTTGA 1443 0.4241 MENQFFLNAGCLIPCTLNLHPNSSMPTWQSLSSPMEIQPTVLNCSSEQTQDCFLQPHMGQVNGSSWSSIDSALRAVGNSDEISPHSQPLVVASSYMNGGNNSTNTSCYSTPLSSPPKLNIAPMMNHLVKENLPKPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSSQLVVNNGELAQRSAPDQDRMEVANSQEESTISEQTPNGKIGVKTSLDMNSRKRKLSSKGKAKEASNTTKGVEGSGEDSNAKRSKANENGTMKVEEESKGGTTNAGEEKQNKGNSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEIFQSNNSLANPIFPLDSSAPAFYGHQPQQNPAIHNNIPNRTMSHTSVDPLDSSLIQNLGMHLPPLNGFSEGSSQYPLTFCEDDLHTIVQMGFGQTTNRKTPTQSPSFNGSNQVPQMKVEL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi66g00060 480 CDD bHLH_AtBPE_like 295 371 - -
Sebi66g00060 480 MobiDBLite consensus disorder prediction 274 288 - -
Sebi66g00060 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 368 IPR036638 GO:0046983
Sebi66g00060 480 MobiDBLite consensus disorder prediction 181 296 - -
Sebi66g00060 480 MobiDBLite consensus disorder prediction 246 273 - -
Sebi66g00060 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Sebi66g00060 480 MobiDBLite consensus disorder prediction 455 480 - -
Sebi66g00060 480 Gene3D - 302 372 IPR036638 GO:0046983
Sebi66g00060 480 MobiDBLite consensus disorder prediction 181 215 - -
Sebi66g00060 480 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 195 401 IPR024097 GO:0006355
Sebi66g00060 480 SMART finulus 311 361 IPR011598 GO:0046983
Sebi66g00060 480 FunFam Basic helix-loop-helix transcription factor 302 373 - -
Sebi66g00060 480 Pfam Helix-loop-helix DNA-binding domain 309 356 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi66g00060 Sebi-Chr66 924432 926845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi66g00060 1 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 38.641 9.26e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi66g00060 HLH 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi66g00060 - - gmx:100801233 610.142