LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi66g00026	ATGGGCACAATACCTTCCAAGCACTATGCTGGGTATGTGACAGTGGATGAAAGTCATGGAAGGAACTTGTATTACATTGTTGTTGTGTCAGAAGGTAAACCTTCTGAGGATCCAGTGGTTCTGTGGCTTAATGGGGACCTGGGTGCTCTAGCTTTGATGGCTTCATATATGAGCATGGTTTCCAATGTCATATATTTGGATTCTCCTGCTGGTGTGGGGTTTTCATACTCTGAGAATGAAACTGATTACAAAACTGGAGACATAAAGACTGCTTCTGATACCATGCTTTTCTTCTTAAGAGTCATATGCTGGAGTTTATGTGCCTACTCTTGCTATGAAGTAATGAAAGGGTTACATGGTTGGAAATGTGTTACGGATGAACAAATTGATGGAAATGCCCTTGTACCATTTGTGCATGGGATGGGTCTTATCTCAGATGATCTGTATCAGGAGGTTAACACTGTGTGCAATGGAAATTTCTATAATCCACTCAATGAGAATTGTGCTAGCAAGCTTGCAAAAGTTGATAAGATCATTGCGGAGGTAAACATATATAACATTCTGGAACCATGTTATCACGGCACAGAGGCAGAGAAGAATGCTGAATCCTATATTAGGTTGCCATCTAGCTTCCGGAAGTTGGGTGAGACTGAGAGACCTCTTCCAGTGAGGAAAAGAATGTTTGGTCGTGCTTGGCCCCTAAGAGCGCCTGTGAGAGATGGAATTGTACCAACTTGGCCAGAACTGATGAATAGCGCTGATGTTCCATGCACTGATGATGAGGTTGCAAACTCATGGTTGAACAATCAAGCAGTCAGGAATGCAATTCACACTGCAAATAAAAGTGTGGTCAATAGTTGGGAATTATGCACGGACAGAATTATCTTCAACCATGATGCTGGGAGCATGATCTCTTACCACAAGAACCTAACTTCCAAAGGATATCGAGCACTTATATTCAGTGGTGATCATGACATGTGTGTTCCATTTACGGGGAGTCAAGCATGGACGAGATCAGTTGGATATAAGATTGTTGATGAATGGAGGCCATGGTTCTCCAATGGTCAAGTTGCTGGGTTTACTCAAGGATACGACAAAAATCTTACTTTTCTGACCATAAAGGGATCTGGGCATACTGTTCCGGAATATAAACCACAAGAGGCATTGGATTTTTATAAACGCTTTCTTGCTGGATTGCCATTATGA	1206	0.4204	MGTIPSKHYAGYVTVDESHGRNLYYIVVVSEGKPSEDPVVLWLNGDLGALALMASYMSMVSNVIYLDSPAGVGFSYSENETDYKTGDIKTASDTMLFFLRVICWSLCAYSCYEVMKGLHGWKCVTDEQIDGNALVPFVHGMGLISDDLYQEVNTVCNGNFYNPLNENCASKLAKVDKIIAEVNIYNILEPCYHGTEAEKNAESYIRLPSSFRKLGETERPLPVRKRMFGRAWPLRAPVRDGIVPTWPELMNSADVPCTDDEVANSWLNNQAVRNAIHTANKSVVNSWELCTDRIIFNHDAGSMISYHKNLTSKGYRALIFSGDHDMCVPFTGSQAWTRSVGYKIVDEWRPWFSNGQVAGFTQGYDKNLTFLTIKGSGHTVPEYKPQEALDFYKRFLAGLPL	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi66g00026	401	Gene3D	-	253	400	-	-
	Sebi66g00026	401	Pfam	Serine carboxypeptidase	4	45	IPR001563	GO:0004185\|GO:0006508
	Sebi66g00026	401	Pfam	Serine carboxypeptidase	60	98	IPR001563	GO:0004185\|GO:0006508
	Sebi66g00026	401	Pfam	Serine carboxypeptidase	123	397	IPR001563	GO:0004185\|GO:0006508
	Sebi66g00026	401	PRINTS	Carboxypeptidase C serine protease (S10) family signature	66	76	IPR001563	GO:0004185\|GO:0006508
	Sebi66g00026	401	PRINTS	Carboxypeptidase C serine protease (S10) family signature	368	381	IPR001563	GO:0004185\|GO:0006508
	Sebi66g00026	401	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	7	99	IPR001563	GO:0004185\|GO:0006508
	Sebi66g00026	401	SUPERFAMILY	alpha/beta-Hydrolases	3	400	IPR029058	-
	Sebi66g00026	401	ProSitePatterns	Serine carboxypeptidases, histidine active site.	368	385	IPR033124	GO:0004185
	Sebi66g00026	401	Gene3D	alpha/beta hydrolase	114	204	IPR029058	-
	Sebi66g00026	401	Gene3D	alpha/beta hydrolase	1	103	IPR029058	-
	Sebi66g00026	401	FunFam	Carboxypeptidase	303	398	-	-
	Sebi66g00026	401	FunFam	Carboxypeptidase	256	400	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi66g00026	Sebi-Chr66	328076	333033	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi66g00026	262	401	Calmodulin-binding Proteins	AT2G22960	45.714	7.31e-40	139

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi66g00026	K16296		-	gmx:100792057	629.402