Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi668g00011 ATGGTTATATATGGAGTTGCAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGAATGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACTCGAACAAATCGAGCAACCACAGCTGGTTTTTGGAAAGCAACTGGAAGGGATAAGGCCATATACCACACCAATTCTAAGAGGATTGGGATGAGAAAAACCCTAGTGTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGATGCAGAGGTTCAGGAAGATGGGTGGGTGGTTTGCCGGGTCTTCAAAAAGAAAAACCAAAATAGAGGTTTCCAACAAGAAATTGAGGAAGAAGAGCACTTAACCCACATGAGATCAACCAGTGGTCCTTGCCACCAGATTCTAGAGCCAAAACATCATCACATGCAAGGACTATATGATTGCACCTTTGATGGGGCAATTCACCTTCCACAATTGTTCAGTCCAGAATCAGCTGTAGCACCCACTTCCTCCATGAACGCCATGGACATCCTTGAATGCTCTCAAAACCTGTTGAGGCTCACAACAACTCCTGGATGTGGACTTAACCTTATGCAACAACATGGAGAGAGGTTCAATGGTGACTGGTCATTCTTGGATAAGCTACTAGCATCCCACCATGGCATGGATCATCCACAAACCAAATGTAATAACCCTCATACTCAACAACATGCTCCAGCTGCAAATGTTGTGGGAACTTCTGCTCAGAAATTTCAATTTCATTACCTTGGTTGTGAGCCCCATGATATCATGAAATTTTCCAAGTAA 825 0.4412 MVIYGVADKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQEDGWVVCRVFKKKNQNRGFQQEIEEEEHLTHMRSTSGPCHQILEPKHHHMQGLYDCTFDGAIHLPQLFSPESAVAPTSSMNAMDILECSQNLLRLTTTPGCGLNLMQQHGERFNGDWSFLDKLLASHHGMDHPQTKCNNPHTQQHAPAANVVGTSAQKFQFHYLGCEPHDIMKFSK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi668g00011 274 Gene3D NAC domain 6 115 IPR036093 GO:0003677|GO:0006355
Sebi668g00011 274 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 204 - -
Sebi668g00011 274 SUPERFAMILY NAC domain 15 110 IPR036093 GO:0003677|GO:0006355
Sebi668g00011 274 ProSiteProfiles NAC domain profile. 1 110 IPR003441 GO:0003677|GO:0006355
Sebi668g00011 274 Pfam No apical meristem (NAM) protein 16 90 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi668g00011 Sebi-Chr668 485069 486610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi668g00011 6 274 NAC Transcription Factor Family AT1G79580 46.914 3.65e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi668g00011 NAM 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi668g00011 - - vun:114178728 461.84