Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi668g00006 ATGGATTCAAATTCCCGTTATCAACTCCAACAAAATTCTGGGTTGCTCCGTTTTCGCTCTGCTCCTAGTTCAGTTCCATCAAGTTTCAAACAAGGTGGTGAAGGTGGTGGTGCTGCCAATAATGGTAATAACCAGTGGGAGGATTTTGAGTCAGAGAGGTTGGTTTTTAGATTCATGAATTCTGGTGAGGGCAATGATAATAATAATACAGATTCTTCTCCTAGCTTTCGAGAATTCGTGCCTTGTAATAATACTAAAGCAGCCAATGAATCTTCAATGTCACCACTGAGCCGCATGAATTCTCAGCAGGGTTATAGTAACCATGGTGCTAGTTCAAGCATGATGGTTGGTTCTATTGGAATGGATCATAACCACCACAAAGGCTTTAACTCCAATCTTATTAGGCAAAATAGTGTACCTGCTGCTGGTCATTTCTCTAGCATCATATCCTTTCAGAATGGGTATGATAGTATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCAGTGATGACTTCCAAATGGGTAGTGAAGGCATTGGGACAACTAGATTGATCTCTTATGATTCTTGGAATGGGACTTCACATCTCTCAGATAAACAAAGAGAGAGAAATGATAAGTTACTTTCTGATGCTCAGAATGGAGAGCTGGGAAATCAAGTTCATGCACTATCACATCACTTGAGTTTGCAAAGAAAGTCATCAGAGATGTTTGCAATGGAGAATTTTCTTCAGTTCCCAGATTCTGTTCCTAGCAATCTCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAGCGAATGAGAAAATTGCAAGAGCTAGTTCCAAACATTGACAAGCAAACCAGCACATCAGACATGTTGGACTTAGCTGTTGTGTACATTAAAGATCTTCAGAAACAATTTAAGACCCTGAGTGAAAAACGAGCTAAATGCAAATGTTCATGCATGCAGAAGTCAGAAAAGAATCAAACTACTTGA 1017 0.4051 MDSNSRYQLQQNSGLLRFRSAPSSVPSSFKQGGEGGGAANNGNNQWEDFESERLVFRFMNSGEGNDNNNTDSSPSFREFVPCNNTKAANESSMSPLSRMNSQQGYSNHGASSSMMVGSIGMDHNHHKGFNSNLIRQNSVPAAGHFSSIISFQNGYDSMKGVGNYGGVNGSDDFQMGSEGIGTTRLISYDSWNGTSHLSDKQRERNDKLLSDAQNGELGNQVHALSHHLSLQRKSSEMFAMENFLQFPDSVPSNLRAKRGFATHPRSIAERVRRTRISERMRKLQELVPNIDKQTSTSDMLDLAVVYIKDLQKQFKTLSEKRAKCKCSCMQKSEKNQTT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi668g00006 338 Gene3D - 262 336 IPR036638 GO:0046983
Sebi668g00006 338 SMART finulus 266 316 IPR011598 GO:0046983
Sebi668g00006 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 329 IPR036638 GO:0046983
Sebi668g00006 338 FunFam Transcription factor bHLH130 family 261 331 - -
Sebi668g00006 338 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 332 - -
Sebi668g00006 338 MobiDBLite consensus disorder prediction 61 112 - -
Sebi668g00006 338 MobiDBLite consensus disorder prediction 1 45 - -
Sebi668g00006 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
Sebi668g00006 338 MobiDBLite consensus disorder prediction 1 30 - -
Sebi668g00006 338 Pfam Helix-loop-helix DNA-binding domain 266 311 IPR011598 GO:0046983
Sebi668g00006 338 MobiDBLite consensus disorder prediction 60 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi668g00006 Sebi-Chr668 97375 99926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi668g00006 13 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 44.413 7.83e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi668g00006 HLH 8.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi668g00006 - - gmx:100796534 365.925