Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi666g00006 ATGGGTTTTGATGGGCTTCAACTTGGTCTTGGACTAGGCCTCAATGATCAATCAGAGGATTATTGCATCAAGATTGATGACCAAAGCCAGAAGAAAAAGATGGAGAATCAATCAAAATGTCATAATAAGGCATATCCATCACTTACGTTAGGACCACCAAAAGAGGATGAAGTAAATGATCAAACTTTATTAGCTTCAAAGACTGAATCCTATGAATATTTCCGTCCCCAACAAGTTTTTTCTCCTAGCGCAGAGTCTTCATTTTCCAACTCATCAAGCATCAAGAGGGAGCGAGATCAAGTTCTTGGTGGAGAGGAATTTGAGGTAGAGGTAGAGAAGGTTCCAATAAGGGTAGATGTTGATGAAGATGGTAATCCCAGGAAGAAACTCAGGCTAACCAAAGAACAATCCGCAGTCTTGGAAGAAAACTTCAAAGAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAAGAAAGCTGAATTTGCGGGCGAGACAAGTGGAGGTGTGGTTTCAAAACAGGAGAGCCAGGACAAAACTGAAACAAACCGAGTCAGAGTGTGAACTACTAAAGAAGTGTTACGAGACTCTGACGGAGGAGAACAAGAAGCTACAAAAGGAATTGCAAGAACTCAAGTCAATGCCAATGCAAACAACGCCAGCACCTTTTTACATGCAGATTCCAGCAGCCACACTTAGCATATGCCAATCCTGTGAGAGAATTTGCGGTGGCAATAGTAATGGATCCTCACCCACGACAACGTTGCTTATTGGCTCAAAGGCCCATCATCATCACTTTTATACAAATAATAACTATCCATTTCCCCACTCATCATCTGCAGCATGTTAG 855 0.4199 MGFDGLQLGLGLGLNDQSEDYCIKIDDQSQKKKMENQSKCHNKAYPSLTLGPPKEDEVNDQTLLASKTESYEYFRPQQVFSPSAESSFSNSSSIKRERDQVLGGEEFEVEVEKVPIRVDVDEDGNPRKKLRLTKEQSAVLEENFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTESECELLKKCYETLTEENKKLQKELQELKSMPMQTTPAPFYMQIPAATLSICQSCERICGGNSNGSSPTTTLLIGSKAHHHHFYTNNNYPFPHSSSAAC 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi666g00006 284 SUPERFAMILY Homeodomain-like 124 191 IPR009057 -
Sebi666g00006 284 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Sebi666g00006 284 Pfam Homeobox associated leucine zipper 183 216 IPR003106 GO:0006355|GO:0043565
Sebi666g00006 284 SMART halz 183 228 IPR003106 GO:0006355|GO:0043565
Sebi666g00006 284 FunFam Homeobox-leucine zipper protein 18 115 188 - -
Sebi666g00006 284 CDD homeodomain 126 184 IPR001356 GO:0003677
Sebi666g00006 284 Gene3D - 120 197 - -
Sebi666g00006 284 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Sebi666g00006 284 MobiDBLite consensus disorder prediction 32 58 - -
Sebi666g00006 284 Coils Coil 175 216 - -
Sebi666g00006 284 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Sebi666g00006 284 SMART HOX_1 125 187 IPR001356 GO:0003677
Sebi666g00006 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 26 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi666g00006 Sebi-Chr666 107439 109220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi666g00006 94 243 Homeobox Transcription Factor Family AT4G37790 61.392 7.40e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi666g00006 Homeodomain 5.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi666g00006 K09338 - gmx:100797650 379.022