Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi666g00001 ATGGCTGGCCCTTTTGACATGATAAGTGCTATCCATCCTGGGAAAGACTCTTGGAGGTTGAGAGTGAGGGTGGCTCGCCTCTGGGAGATGTGTTCCATTGTAGATCCTTCAAGGCCATTTGCCATTGATATGGTCCTTATTGATGTTGAGGGTGGAAATATTCAGGCCACAATTCGAAAGCCAATGATGAAGAAGTTCAAGGATGTGATTGTTGAGGGTGAGGTGTACACAATGTTGAATTTTGCTGTGATAAAGAATGTTGGGAGTTATCGTGCCTCCAGGCATGAGTACAAATTGTTGTTTAGTGCCAAGACAAAAGTATTTCCAGCTAAATCTTGTGCGATACCATCTGTTGGACTGTCGTTAATGAGCACTGAGCAAATTACTAAGACTAATGGAGAGTCGAATTATCTGTTTGACTTCATGGGTGTCTTGACTGCTATTTCTGCTGAGAAAGTGGTTGAAACTGAAGGGAGGAAGACAAGAATGATGGAAATGGAGCTTGCTGATGACAAGGGAAGGCTGCGATGCACAGTCTTTGGTGACTATGTTGAAACTCTGAACAGCTATGTGGCATTAGGTGTCACTCCATTGCCAGTTGTTGTTGTGCAACTTTTCAAAGTTAGGTTATATAAGGGCAACGTTGTTTTGCAGAATGTGAACAACACCTCCAGGATTTTGTGGAATCCTGATTTTACTGAAGCGAACAACTTTAGGAATAGCTTGGCTTGCCATGGAATTGACTCTGATGTTGAGATTGGGGTTATAGAGCCAGGGAACCGTGTTGTTCCACTGGCTGATGATTTTTTGAGACTGCACCCTAGGAAAACTCTCAATGAGCTTCAGATCACTGAGGAGGACGGTATTTTTATTGTGCATGGAACTATTGTCTCTGTATTGAAGGAGGAACAGTGGTGGTATGGGGCTTGCAAGTGTTATAAAGCGGTTACACCTGATGGGGGTCTCTATTACTGTTCTAATTGTTGTACACATGTTGTGGAAGTGACCCCTAGGTATAAAGTGAAGGTTGAAGTTTTCCATTGGGATGATTCTGCATGCTTGATTTTGTTTGACTCAGATTGTGTTTCTCTTCTGGCTAAGCCTTGCAAGGAGTTGCTTGCGGAGTCCAAGGGTTCAAAGGCTGGTGAACTTCCTTCTGATATTATGGGTCTGATTGGGAAGGAACTTCTGTTTAAGGTAGAGAAAACAGCTGAAGTTGTTGAGATTTGTTTAGTTTTCACGTGCCTTTTAAGTTGTGGAAGTCTTTTATTAGTTGAGTTGCAGACAACCTTTCATCGCAAGTTGAAGACATATTGTTGTGTTCACTGGTTAGCACAAACACAGAAAACCTTCTTGGTTGCATTTGGGCTCATGCGTTGCTTGAATAGAAGGAGGGTCCGAATGCCTGGTAGGAATTTCTTTGTTGTCTTCCGCGAGTATGAGGGGCATATACCCATTCCCAGGTGGTTTTTCCAAAGATGGGGAGATCTTTTGGATGATATTGTTTTACTGAAAGATCCAGTTGGGAATCTTTTCCCGGTTTACATATGCATCAGGAATGAGCGTGGATACTTTTTCCTTGGGGTTGAAAAGCTTAGAACTGCATATGCTCTGCACACCACGTTCACAGTGGCCTTTTTATTGTGA 1647 0.4281 MAGPFDMISAIHPGKDSWRLRVRVARLWEMCSIVDPSRPFAIDMVLIDVEGGNIQATIRKPMMKKFKDVIVEGEVYTMLNFAVIKNVGSYRASRHEYKLLFSAKTKVFPAKSCAIPSVGLSLMSTEQITKTNGESNYLFDFMGVLTAISAEKVVETEGRKTRMMEMELADDKGRLRCTVFGDYVETLNSYVALGVTPLPVVVVQLFKVRLYKGNVVLQNVNNTSRILWNPDFTEANNFRNSLACHGIDSDVEIGVIEPGNRVVPLADDFLRLHPRKTLNELQITEEDGIFIVHGTIVSVLKEEQWWYGACKCYKAVTPDGGLYYCSNCCTHVVEVTPRYKVKVEVFHWDDSACLILFDSDCVSLLAKPCKELLAESKGSKAGELPSDIMGLIGKELLFKVEKTAEVVEICLVFTCLLSCGSLLLVELQTTFHRKLKTYCCVHWLAQTQKTFLVAFGLMRCLNRRRVRMPGRNFFVVFREYEGHIPIPRWFFQRWGDLLDDIVLLKDPVGNLFPVYICIRNERGYFFLGVEKLRTAYALHTTFTVAFLL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi666g00001 548 Pfam Replication factor-A C terminal domain 291 400 IPR013955 -
Sebi666g00001 548 CDD RPA1_DBD_B_like 140 234 - -
Sebi666g00001 548 SUPERFAMILY Nucleic acid-binding proteins 273 400 IPR012340 -
Sebi666g00001 548 CDD RPA1_DBD_A_like 19 107 - -
Sebi666g00001 548 CDD RPA1_DBD_C 276 400 IPR047192 -
Sebi666g00001 548 Pfam Domain of unknown function DUF223 44 112 IPR003871 -
Sebi666g00001 548 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Sebi666g00001 548 Gene3D - 271 412 IPR012340 -
Sebi666g00001 548 PANTHER OS03G0429900 PROTEIN 7 404 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi666g00001 548 Gene3D - 4 109 IPR012340 -
Sebi666g00001 548 Gene3D - 114 249 IPR012340 -
Sebi666g00001 548 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi666g00001 Sebi-Chr666 17601 21275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi666g00001 8 372 Core DNA Replication Machinery Family AT4G19130 23.174 6.08e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi666g00001 - - lja:Lj6g3v0884310.1 366.311