Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi665g00011 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGCAGAAGAGTATCAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGTGAGCCACTTCACTCTTTGGAAGAGAGACTTTGTGTATCAACTGAAAGAATTAAAACACACAGAACAAAGTCTGATGCCTCAAGACATCAGATTAGAAGTGAACTGTTAAAAAGTGAGACTCATAGGAGGCCAAGAAATGATGTTTTTATAGGAGACAAAACAGATGAACTATTGAAGAATGAGGCTGAGAAGAAATCTTCTAGCAATACAAATTCAGGCAAAGGAATTGACAACAATTCATCAGAATACATGCCAAGGTATGAGGTGAGTGAACAAGAAGGTAGCATAGTTGAAGATGGCTATTCAAACAAAGTGTCTAATGCAAAAAGAGGCAAAGAAAAGTCATTCAAGGATGCAAAGGTGAGTAAGATGCATAGCAGAAGTTCCAGTATACATATGCTTAGACACTCTAGTGAACATGGAAAGAATATGAAACCTGAGGCTGAGGAGGAGTCATACACTAGAGTTAATAACAAAAGCTTTGAAGATAGCAGAAATAAAAATAGTCATCATGCAATGCAAGCAGCTTCTAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAAACGCTTTCTAAAGGATGAGGATTTTCGGTCTACTTTGCGCCATAATTGTTTCTCCTCCTTGAATTTTATTCAGGTGGATGAAGAAAACAATACTGAGATCAAAGTCATTAGAAGTCTTGAGCAAGCAATTGAAACCATAGAACAACATGCTGAGGAACCTATATCTGCCTCATATCTGAAAAAAGCCATGATGCAACTTAGCATTATTACAGGTTTGAGTTTAAATGATCTCAAGTATGGGTGTACATGTGGGATCCCAAATTATAAGTTATCAGCTTGTGCTCATCTTTACCTCAGTGTGGCAAGGACAACATTGTTGCCTGAACTGTGGGAGCATCTATTTTCTCAACAATTTTCCCATTTGAAGGCATGGTACAACAAGGAAGCTGAAATTTTAATAGATACACCAAGTAAAACCAAAAAGCTAAAGCTTCTTCAAAAAATGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTGTATTACAAAGATTGGCTTACTGAAGGAGTAGAATCTCCAACTATTCCTTCTATTGGCATTCCATCAATATCTGTTACAGGAAGTCAACAGGGAAGTTCACTTGGTCATTCTTCAGAGTCTGCTAGCTCCACAGATCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTATATGATTCTGTCTTTGGTATCTCTAGTAAACCTGGAAGCTATGAAGCTGAAGATGATAAGGATGAAGATAGCCTAGAAGATTGTGTGAGAGATCAAGATACTGAAGATTTCACTCAAAGTGTACCAGTTGATGCATTCCATCCTCCAAATAAGACAAGCTCTACTCTTGAAGGATCATATTTTGAAAGCATTCCACAGGAATTCATTTGCCCACTCACTGGAAATATCTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAAAAGCCATCAAAGCATGGCTTGAAAAGGGAAACAGAACATGCCCAGTAACAGGAAATGCTTTAGAATGTGTAGCCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCTGAACGCTTTAATCATCTTATGGATTTTGCTTCTCCATCAGTGGAAAATTCAAAGGATCTTAAGTTGAAAAAGAAGGATGAGGCTACTGTTTTCAAGTTAGAGGGTCTTCTGTCCTCTATGAAAGAAGAGGACAAATCAACTTATGCTAAGCACCTGATATCTTTAGGAGTTCTTTCATTTCTTCTTAGGAGGTTTGAAGTGGGGAATATGGAAGAAAAATCATATGTGGTGGCACTCTTGCTAACTTTTATTCATGCAGACTCTGGTTGCATATTTCAGATAGCAAGAAATGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAAGAGGTTACCCCAATAACAAATGCAATACTATTCCTTACTGAACTTTTATCTATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAGATGTATTTGATACAATGCATATTCTGCTCGTGTATCTCAAGAATTCTTCTCCACTTGAAAAGCCCTTAACTGCTGTCCTTTTGTTACATTTTGATCTAATGGTTGAGCCTCAAAAGTTTAGTATATACAGGGAGGTGGCTGTGAAAGCCATTGCAGTGGCACTTGATGCCAGCTTAAATGATGAGAAAGCCCGAGAAAAGTGTTGCAGAGCACTTTTAATCATGTGTGGCCATTTTTCTTCTATGGGAAAGATACTGACCAAGACTAGCATCTTGAAACAAGCAGGTTATAATAATGATAACTCAGAATTGAAACCTCCTAGACATGAAGAAGAGGGTCAACAATCAGATATAACCATTTCATCAGAAGATGAAGAAGAAAGGGGTGAAGAGTTGCAAATGAACTTGTTAGAATCGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGACCATATCAAGATGTTTAGATTCTAGGCACAAAGATTTGGTGAATGCATGTCTAATAACTGTTATATGGTTGACCTCCTCACTTTCTGTGCTATTTAATGCCGGATTGCATCTTCCTGCCTTATTAGCCATCATCTTTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGATCCTTGCATCTATGTCCTTGCTTAACTTCAGTAAAATATCAGAATGCAGAACAGTTTTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTTATGAACTTGTTGATGTAACATGGACTGCGAAGCAGCTGCATGCCATTGTGTCTAGGGAGAATCTGTAG 2970 0.3832 MASSLEELLAEEGFKGRRVSRSRSSFHYGASSEPLHSLEERLCVSTERIKTHRTKSDASRHQIRSELLKSETHRRPRNDVFIGDKTDELLKNEAEKKSSSNTNSGKGIDNNSSEYMPRYEVSEQEGSIVEDGYSNKVSNAKRGKEKSFKDAKVSKMHSRSSSIHMLRHSSEHGKNMKPEAEEESYTRVNNKSFEDSRNKNSHHAMQAASSLALDEVAVQAVVSILNGYIKRFLKDEDFRSTLRHNCFSSLNFIQVDEENNTEIKVIRSLEQAIETIEQHAEEPISASYLKKAMMQLSIITGLSLNDLKYGCTCGIPNYKLSACAHLYLSVARTTLLPELWEHLFSQQFSHLKAWYNKEAEILIDTPSKTKKLKLLQKMYNEHLDSGTHIFAVYYKDWLTEGVESPTIPSIGIPSISVTGSQQGSSLGHSSESASSTDPFSPQPMVSKKLYDSVFGISSKPGSYEAEDDKDEDSLEDCVRDQDTEDFTQSVPVDAFHPPNKTSSTLEGSYFESIPQEFICPLTGNIFEEPVTLETGQTFERKAIKAWLEKGNRTCPVTGNALECVAMPFTNLILKRLIDNWKSERFNHLMDFASPSVENSKDLKLKKKDEATVFKLEGLLSSMKEEDKSTYAKHLISLGVLSFLLRRFEVGNMEEKSYVVALLLTFIHADSGCIFQIARNVNRKCLLELLHSKEVTPITNAILFLTELLSMKRRKDVTSFISGLAGEDVFDTMHILLVYLKNSSPLEKPLTAVLLLHFDLMVEPQKFSIYREVAVKAIAVALDASLNDEKAREKCCRALLIMCGHFSSMGKILTKTSILKQAGYNNDNSELKPPRHEEEGQQSDITISSEDEEERGEELQMNLLESLIGDGESPFLKTISRCLDSRHKDLVNACLITVIWLTSSLSVLFNAGLHLPALLAIIFQLKGILENGELELKILASMSLLNFSKISECRTVLKTMAEDIAPLLYELVDVTWTAKQLHAIVSRENL 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi665g00011 989 CDD RING-Ubox_PUB 514 562 IPR045210 -
Sebi665g00011 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 590 IPR013083 -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 49 95 - -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 824 852 - -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 164 201 - -
Sebi665g00011 989 SMART Ubox_2 516 580 IPR003613 GO:0004842|GO:0016567
Sebi665g00011 989 Pfam U-box domain 513 584 IPR003613 GO:0004842|GO:0016567
Sebi665g00011 989 MobiDBLite consensus disorder prediction 418 443 - -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 418 442 - -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 96 118 - -
Sebi665g00011 989 ProSiteProfiles U-box domain profile. 512 587 IPR003613 GO:0004842|GO:0016567
Sebi665g00011 989 SUPERFAMILY ARM repeat 606 955 IPR016024 -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 49 201 - -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 137 157 - -
Sebi665g00011 989 SUPERFAMILY RING/U-box 506 587 - -
Sebi665g00011 989 PANTHER OS04G0584500 PROTEIN 501 987 - -
Sebi665g00011 989 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi665g00011 Sebi-Chr665 127008 132273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi665g00011 513 629 U-box Gene Family AT5G42340 37.607 8.08e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi665g00011 - - lja:Lj1g3v3329610.1 1438.32