Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi665g00008 ATGGCAGCATCAACATCTTGTGTTAGCAACAATCCATCCCCCATGAAAGAGACAGATCCAATCTCTCATTCATATCCTACACCTCTTGCAAGATATGAGGAAGTTGTAGCAAATCCAAAGTTGTTCATGTTCACATTGGAGAAGCTCCATGCTTCCATGGGTACCAAGTTCATGATTCCCATTATTGGAGGAAGAGAATTAGATTTACATCGCCTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAAAAGCTTATTAGGGAGAGAAGATGGAAAGAAGTAACTGCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTTTGTGTTGCGGAAGTACTATTCTTCATTGCTTTACCATTATGAACAAATCTATTATTTTAGAGCCAATCAATGGACCCCTGCAACTTCTGATGCCATGCAGAGTCATTCAACCATGTATGTTCCTGCTCAAAGAACGCAGTTTTCGCAGCCTTCCCTAGGAGTTCAACCAGCTATCTTTCAACAGTCAATAGTTAATGTTGCTGAATTGCATGAAGGATCCCAAGTAAATGGAGTTATTGATGGGAAATTTGAAAGTGGGTATCTAGTTTCAATTTCAATAGGTTCAGAGATTCTCAAAGGAGTCCTTTATGAAGCTCCACAAATCCCGATATCGTCGGCCTTTGCAACACATCGACAGAGTATTATGGCTAAGAACAACAATGTCTCTATTGCTTTAGGTGTCCATCGTCGACATCGCAGGAAGAAATCAGAAATCAAAAGAAGAGATCCTGCTCATCCAAAACCCAATAGAAGTGGTTATAATTTCTTCTTTGCTGAGCAACATGCTAGACTAAAGTTACTAAATCAGGCAAAAGACAGAGATATTAGTAGGACGATTGGTGAACTTTGGAACAAGTTAAAAGAGCCTGAAAAATCAGTTTATCAAGAAAAGGCTCTTAAGGATAAAGAGAGGTACAAGGCAGAAATGGAGAATTATCGCGAGAAATTGAAGATGTGCCATGTGATCAGCGATCTTGTGCCATTGCAACAACAACTTCCTGAAGTAGATACAACTTTGGTTGATGTGGACATAAAATTGCTTGGTTCTTCTCAAACTCCAGAGGAGAGTAGTTATGGTGGAAATGACTATGAAGATGATATCAGTATGGATGCATCTCCTGGAGTAAAAATGGGCGTTGAAGCTACCTATATGAGTTCAAACAAGGCATCTGATGAGGGGGATTGCGAGCTTCTTGGTCATTGCGAGAGAGAAAGGGATAATGGAGTTTTACAAGTTCAGAATATGAACGACAGTCAAAATATGCTAGCACTACTTTAA 1326 0.3982 MAASTSCVSNNPSPMKETDPISHSYPTPLARYEEVVANPKLFMFTLEKLHASMGTKFMIPIIGGRELDLHRLFIEVTSRGGIEKLIRERRWKEVTAVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRANQWTPATSDAMQSHSTMYVPAQRTQFSQPSLGVQPAIFQQSIVNVAELHEGSQVNGVIDGKFESGYLVSISIGSEILKGVLYEAPQIPISSAFATHRQSIMAKNNNVSIALGVHRRHRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRTIGELWNKLKEPEKSVYQEKALKDKERYKAEMENYREKLKMCHVISDLVPLQQQLPEVDTTLVDVDIKLLGSSQTPEESSYGGNDYEDDISMDASPGVKMGVEATYMSSNKASDEGDCELLGHCERERDNGVLQVQNMNDSQNMLALL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi665g00008 441 Pfam HMG (high mobility group) box 262 329 IPR009071 -
Sebi665g00008 441 SMART bright_3 37 128 IPR001606 GO:0003677
Sebi665g00008 441 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677
Sebi665g00008 441 MobiDBLite consensus disorder prediction 1 20 - -
Sebi665g00008 441 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 262 329 IPR009071 -
Sebi665g00008 441 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Sebi665g00008 441 Coils Coil 311 331 - -
Sebi665g00008 441 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Sebi665g00008 441 Gene3D - 28 145 IPR036431 GO:0003677
Sebi665g00008 441 MobiDBLite consensus disorder prediction 246 268 - -
Sebi665g00008 441 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 354 - -
Sebi665g00008 441 PRINTS High mobility group (HMG1/HMG2) protein signature 313 333 - -
Sebi665g00008 441 PRINTS High mobility group (HMG1/HMG2) protein signature 294 313 - -
Sebi665g00008 441 MobiDBLite consensus disorder prediction 1 21 - -
Sebi665g00008 441 SUPERFAMILY HMG-box 249 333 IPR036910 -
Sebi665g00008 441 FunFam High mobility group B protein 15 30 143 - -
Sebi665g00008 441 Gene3D High mobility group box domain 246 337 IPR036910 -
Sebi665g00008 441 CDD HMG-box_AtHMGB9-like 262 328 - -
Sebi665g00008 441 SMART hmgende2 261 330 IPR009071 -
Sebi665g00008 441 SMART ARID_2 33 123 - -
Sebi665g00008 441 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi665g00008 Sebi-Chr665 95729 98670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi665g00008 3 362 ARID Transcription Factor Family AT1G04880 57.447 8.47e-127 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi665g00008 ARID 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi665g00008 - - gmx:100783284 552.362