Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi665g00006 ATGCCGGAGCTTCGTAGTGGACGCCAGCGTCGTCGTGGTGCTCCGGTAGGCCGTAGAAGCTCAGAACCACCGTCTCGGGCGGCAAAATACGTGAAAACTCGGGCTGCAGTGGCTGCAGCTAAGAAACTTGAGGAGGAGAAGGCGGTGATCGTAATTTCAGAGCGTGATAGCGATATAAATAAGGAGAAGGAAGACTTGATGGGTGATGAAAGTGGCGGTTTGAGTGCTAACAAGGGCCTTCCTCAAGAGGATGAGGGCAACACTGCCCCTTTTCCCGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAACTGGGTAAAGGTGGGTTTGGACAGGTTTTTGTTGGCCGTCGAGTTACTGGTGGTAATGACCGTATTGCTGGCCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAATAGTAAAGGCTGTAACTATGGCCCTCCTTATGAATGGCAAGTGTACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAGGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTCGCATGTATTGCTGTTGAGTCATTGTCAATTCTGGAGAAGATGCACTCAAGAGGATATGTGCATGGCGATGTAAAACCAGAAAACTTTTTACTAGGCCAGCCAGGTACAGCACAAGAGAAGAAATTGTTCCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACATCCAGTGGACAGCATGTGGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTCGAAGGGATGATCTTGAATCTCTTGCATATACACTTATTTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGTTATGCTGCTTCTGCCCTCCTCCTTTTAGGCAGTTTCTTGAGGTTGTAGTTAATATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATATCTCTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGCGACCAATTAACACCGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGAGCAGATTGAATACTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAACGTAGCGGATGCAAGATTAGCACAGCATGTGGAGAGAGGGGTTGCAGATGGTCTTCTTATTAGTTGTGTAGCTTCTTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTGTCTCCTTTCTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGCTAATAATGGGAGCTCTCTTGTAGTGATGTCAAAAGGTGAGCTTTCTTTAGTGCTTTTATTTGGACAAAGATCTAAATTCTGCACTCTATATGCAAGCACCCAGTATACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACTTCAATGGCCACTGCTGGAAGTCGCTGGGGCGTTGTTATGTCTCGGAATGCTGGATTCAGTGATCAGGTCGTTGAACTTGATTTTCTCTACCCTAGTGAAGGCATCCACAGACGTTGGGATAGTGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATTTTAAGCATTCCAAGGCGCAGGCCTGGCGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGTTAGGATTGATGGATGA 2016 0.4454 MPELRSGRQRRRGAPVGRRSSEPPSRAAKYVKTRAAVAAAKKLEEEKAVIVISERDSDINKEKEDLMGDESGGLSANKGLPQEDEGNTAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRIAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEVVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRSRLNTEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGVADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGELSLVLLFGQRSKFCTLYASTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKVRIDG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi665g00006 671 MobiDBLite consensus disorder prediction 403 417 - -
Sebi665g00006 671 MobiDBLite consensus disorder prediction 1 29 - -
Sebi665g00006 671 FunFam casein kinase 1-like protein HD16 76 421 - -
Sebi665g00006 671 CDD STKc_CK1 103 378 - -
Sebi665g00006 671 Gene3D Transferase(Phosphotransferase) domain 1 84 426 - -
Sebi665g00006 671 SMART serkin_6 103 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi665g00006 671 SUPERFAMILY Protein kinase-like (PK-like) 103 386 IPR011009 -
Sebi665g00006 671 MobiDBLite consensus disorder prediction 55 95 - -
Sebi665g00006 671 Pfam Protein kinase domain 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi665g00006 671 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Sebi665g00006 671 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi665g00006 671 PANTHER CASEIN KINASE-RELATED 103 647 - -
Sebi665g00006 671 MobiDBLite consensus disorder prediction 55 69 - -
Sebi665g00006 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Sebi665g00006 671 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi665g00006 Sebi-Chr665 59449 65594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi665g00006 221 378 MAP Kinase Kinase Kinase AT5G50180 25.000 3.93e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Sebi665g00006 Pkinase 1.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi665g00006 - - gmx:100819969 1159.05