Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi664g00027 ATGATGGCAAATAACTTAACGGGTCAACTGGTGGGCTCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATTTGGGGGGCATTATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAACGAGATTCATGCCATGCTTTGTAATTACAAGTATTTCACAATCAATGTCAAGCCAGTACATTTACCCAAAAGTGGTACTATAGTATTATTTGACCGCAAGATGCTAAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACAGTTAAAGAAGCTCATGAGCATTTAAAGGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGTCAAGATAACCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATTGTCCTTGTTCATTACCGTGAAACACAGGAGATGCAAAGTTCTCCTGTGACTCCTGTAAACTCAAACTCCACTTCTGCCTCTGATCCAACTGCACCGTGGATTTTATCAGAAGAAATAGATTCAGGGACCACAACTACATATGCTGGTGGGATTAATGACAATATAACAGTCAAAAACCATGAACTGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTTAACACCTCTACTGCACCTAATGGAGGCAAAGTTCCATATTTTGATCAACAAAATCAAATTTTACTGAATGACAGCCTCGGCAATGTGGCCAGCAATCCATCTGCAGAAATTCCATCTTTTAATAATTTAACTCAGCAAATTGCCGGGAACAATAGTGCTCCTTACAATATTTCAGAAAGTGTTAATCTTCAGACAATGGACAATCAAGTAATACCAAATGAGCAGAGGAATAATCCTGTCTCTTTAAGTGGCGTTGATTCCTTGACCACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGTTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCACCAGGTTCAGTAGATGAGTCAGCTCTTGAATCCTCAGTTTCATCCGTTCATGAACCGTATCGGTCCCTGGTAGTGGATAATCAGCAACTTTCTCTGCCAGATCAAGTATTTCATCTCACTGATGTATCCCCTGCATGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGACTATCAGCACCTCTCAAAGTTCAATCTATTGTGTGTCTGTGGTGATGTAAGCGTTCCAGCAGAAGTTGTTCAGGATGGGGTCTATCGATGCTGGGTATCACCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCACAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACACCTGTTTTGCATGATCCAGCAGCTTCTATGGAAGAGAAGGACAAGTGGGACGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACATAATCTTGATGTTATCTCTAGTAAAGTGCCACCTAATAGACTGAAGGAGGCTAGGGAATTTGCCTTAAAAACATCATTTATTTCTAATAGTTGGCAATACTTAATGAAGTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGAGGCCCTATTTGAAATTGCATTGAAAAATAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGTGGCTTGTCGCTGGATTTCCGTGATAAATTTGGATGGACAGCTCTTCATCGGGCAGCATATTGTGGAAGGGAGAAGATGGTTGCAACCCTGTTGTCTGCTGGGGCAAAGCCTAATTTGGTCACGGATCCAACTCCACAAAATTCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAGTCTCTTGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATGTCAGTGGCTCATTGGAAACTAGCACAACTGATCCAGTAAATTCTGAGAACCTTAGTGAGGACCAGGTGTACCTGAAGGAAACCTTGGCAGCTTACCGAACAGCTGCCGATGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCGCTCCCTAAAATTGCGAACTAAGGCAGTTGAGTTTTCCAGTCCAGAGGCTGAAGCGCGCAAAATAGTTGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAATGATGGCGGCTGCTGCTCGCATTCAGCATACATTCCGTACATGGAAGATTCGTAAAGAATTTCTCAACATGCGCCGCCAAGCTATTAAAATTCAAGCTGCTTTCCGGTGCTTTCAAATGCGGAAGCAATATCGTAAAATTCTATGGTCGGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGCGGTCTGCAGCTTAACACTGTGGAAGCAACAGCAGATCAGAATCAGCAAAGTGATACAGAGGAGGAATTCTTTCGAGCTGGTAGGAAACAAGCTGAAGAACGAGTTGAGAGAAGTGTAGTCCGCGTGCAAGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGAATATTTCCTTTGTGCAGTTGGAACGGGAATATGAACAACTCCTCAGTAGTGAAGTTGACATGGAACAGAAGATATAG 2694 0.4232 MMANNLTGQLVGSEIHGFHTLQELDLGGIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSLEHIVLVHYRETQEMQSSPVTPVNSNSTSASDPTAPWILSEEIDSGTTTTYAGGINDNITVKNHELRLHEINTLEWDDLVVANDLNTSTAPNGGKVPYFDQQNQILLNDSLGNVASNPSAEIPSFNNLTQQIAGNNSAPYNISESVNLQTMDNQVIPNEQRNNPVSLSGVDSLTTLVNDRLQSQDSFGMWVNQIMSDSPGSVDESALESSVSSVHEPYRSLVVDNQQLSLPDQVFHLTDVSPAWVSSTEKSKVLVTGFFHKDYQHLSKFNLLCVCGDVSVPAEVVQDGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMEEKDKWDEFRLQMRLAYLLFAKQHNLDVISSKVPPNRLKEAREFALKTSFISNSWQYLMKSTEDNKIPFSQAKEALFEIALKNRLKEWLLERIVLGGLSLDFRDKFGWTALHRAAYCGREKMVATLLSAGAKPNLVTDPTPQNSGGCTAADLAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNVSGSLETSTTDPVNSENLSEDQVYLKETLAAYRTAADAAARIQAAFRERSLKLRTKAVEFSSPEAEARKIVAAMKIQHAFRNFETRKMMAAAARIQHTFRTWKIRKEFLNMRRQAIKIQAAFRCFQMRKQYRKILWSVSVVEKAVLRWRLKRKGFRGLQLNTVEATADQNQQSDTEEEFFRAGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALNQAKNISFVQLEREYEQLLSSEVDMEQKI 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi664g00027 897 Gene3D Immunoglobulins 365 460 IPR013783 -
Sebi664g00027 897 Pfam Ankyrin repeat 575 605 IPR002110 GO:0005515
Sebi664g00027 897 SUPERFAMILY Ankyrin repeat 511 635 IPR036770 -
Sebi664g00027 897 Gene3D - 515 643 IPR036770 -
Sebi664g00027 897 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 562 - -
Sebi664g00027 897 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Sebi664g00027 897 SMART CG_1_2 29 147 IPR005559 GO:0003677
Sebi664g00027 897 Coils Coil 876 896 - -
Sebi664g00027 897 SUPERFAMILY E set domains 371 457 IPR014756 -
Sebi664g00027 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 789 IPR027417 -
Sebi664g00027 897 SMART iq_5 840 862 IPR000048 GO:0005515
Sebi664g00027 897 SMART iq_5 737 759 IPR000048 GO:0005515
Sebi664g00027 897 SMART iq_5 760 782 IPR000048 GO:0005515
Sebi664g00027 897 Gene3D - 737 785 - -
Sebi664g00027 897 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Sebi664g00027 897 ProSiteProfiles IQ motif profile. 738 767 IPR000048 GO:0005515
Sebi664g00027 897 FunFam Calmodulin-binding transcription activator 5 365 461 - -
Sebi664g00027 897 SMART ANK_2a 574 603 IPR002110 GO:0005515
Sebi664g00027 897 SMART ANK_2a 613 644 IPR002110 GO:0005515
Sebi664g00027 897 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Sebi664g00027 897 ProSiteProfiles IQ motif profile. 842 870 IPR000048 GO:0005515
Sebi664g00027 897 Pfam IQ calmodulin-binding motif 763 782 IPR000048 GO:0005515
Sebi664g00027 897 Coils Coil 854 874 - -
Sebi664g00027 897 ProSiteProfiles Ankyrin repeat region circular profile. 574 602 - -
Sebi664g00027 897 ProSiteProfiles IQ motif profile. 761 789 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi664g00027 Sebi-Chr664 270796 279496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi664g00027 29 872 CAMTA Transcription Factor Family AT3G16940 53.470 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Sebi664g00027 CG-1 2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi664g00027 K21596 - gmx:100793970 1499.57