Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi664g00003 ATGGGAAGCTCAGGAAGAGAAGAGGTTCTGAAGAAGATCCAAGAGCTAGAAGAAGGTCACGCTCACCTCAAGCAAGAAATGTCGAAGCTTAAGCTTTCCGATGAAAGAGGGAAACAGCACCATCGCCAGAGGTCTCACTCGGTGTCTCCACAACGTTCCAGATTGGGTGATGGATCAGCTGCGTGGAAGAAAGGCACTTGTTCCTTCAAACAATCCTCGCCTCTTCAGAGGGAGAGTCGTGGTGAACCTCAAAATGAAGCAAAAGGAAAAGGTGGTGGTGCTCCTTCCGCTGTCAATTTTTCTGAAGGCCAGTATCTCAATATTTTGCAGTCAATGGGACAATCTATTCATATATTGGATCTTAACTATCGTATAATATACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCAGCAGAGGAAGCTCTAGGACAGGATGGGATTGAGCTGCTTGTAGACCCTAGAGATTTGACCTTAGCCTATGATACAGTGAACCGTGTCATGATGGGAGAGAGATGGACTGGACAATTCCTAGTCAAGAATAAGATGGGAGAGAATTTTTTAGCTGTAGCAACTAATACACCTTTTTATGATGATGATGGAAGCTTAGTCGGGGTTATTTGTGTCTCAAGTGATTCACGGCCTTTTCTTGAAATGAGAGTTCCATTCTCAAGTGTAAAGAATGCTGAATCGGATTCAGGTTCCACCCGTCCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACTCTCAACAGCCACTTCAAGCTGCCCTGGCATCTAAACTTTCAAATTTGACGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGTGGAGAAAGTCATCATTCTGAACATAGTTTATCAGAATCTGTTCTTACAGACCACAGAGAATATGCTAATTCAAGTGGAGCTAGCACACCAAGAGGTGATTTGCCACAGTCCCCTTTTGGTGTATATGAGACTGAAGGAAAACCTATACACAAAAGTATACCCTCTAAGGCTGAAGCCTGGATTCAGAAGAAAACATTGTCATGGCCATGGAGGACAAATGAAAAATCGGAGGCAAGGAATGTTCATGTTGCTGGGTCATGGAGGCAGAATGATCAAGGAAATGAATCAGCTAATCAAAAGATTGTTTCCTCTGGTTTGAAGCAGGAAAGCAAGACAGATGAAAGTAATCGCCCTGTTAACAATGAGGCTTCTGGATCCTGGTCCTCCTCCTTTAATGTTAAGAGCACAAGTAGTGCCAGCAGTTGTGGGAGTGCCGGCAGCTGTGCTGTCAACAATAAAGCAGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGATGTTGCCGTCAAGGTTTTTTCAAAGCAAGAATATTCAGAGGATGTGATACTGTCCTTTAAACAAGAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCATCAGATGAGAAGTCTGATGTATACAGCTTTGGGGTGATATTATGGGAACTTGCAACTGAAAAGATCCCTTGGGATAATCTCAACTCAGTGCAGGTGATTGGAGCTGTAGGGTTCATGAATCAGCGGCTAGAAATTCCAAAAGATGTTGATCCACGGTGGGCTTCAATAATTGAGAGCTGCTGGCATAGTTTGTCCATTCCTACCATCCAACTCTCAGACCAACATTCCGGGAACTGCTTGAAAGGCTTAGAGAGCTGTAAAAACGGTATGCCATTCAGTTCCAGGCAGCCCGATCTGCTGGCGGGGAAAGCACCCAAAAGGAGTCCTAGACACAACCTTGGAGCTATTCTTTCTTTTTGTCACACGTGGCTGATGCATAAGGATATTTTCTGCATATATTTTATCAAAGTTCTTGGAGTAGATGAAATGGTACAAACAGCTGGTCTTGGAGCCATGTAG 2019 0.4373 MGSSGREEVLKKIQELEEGHAHLKQEMSKLKLSDERGKQHHRQRSHSVSPQRSRLGDGSAAWKKGTCSFKQSSPLQRESRGEPQNEAKGKGGGAPSAVNFSEGQYLNILQSMGQSIHILDLNYRIIYWNRSAENLYGYAAEEALGQDGIELLVDPRDLTLAYDTVNRVMMGERWTGQFLVKNKMGENFLAVATNTPFYDDDGSLVGVICVSSDSRPFLEMRVPFSSVKNAESDSGSTRPRSSITNKLGLDSQQPLQAALASKLSNLTGENNVDREGGSGESHHSEHSLSESVLTDHREYANSSGASTPRGDLPQSPFGVYETEGKPIHKSIPSKAEAWIQKKTLSWPWRTNEKSEARNVHVAGSWRQNDQGNESANQKIVSSGLKQESKTDESNRPVNNEASGSWSSSFNVKSTSSASSCGSAGSCAVNNKADVDTDCLDYEILWEDLTIGEQIGQGSCGTDVAVKVFSKQEYSEDVILSFKQEVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSVQVIGAVGFMNQRLEIPKDVDPRWASIIESCWHSLSIPTIQLSDQHSGNCLKGLESCKNGMPFSSRQPDLLAGKAPKRSPRHNLGAILSFCHTWLMHKDIFCIYFIKVLGVDEMVQTAGLGAM 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi664g00003 672 MobiDBLite consensus disorder prediction 264 333 - -
Sebi664g00003 672 Gene3D Transferase(Phosphotransferase) domain 1 471 586 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 395 409 - -
Sebi664g00003 672 Gene3D PAS domain 113 216 - -
Sebi664g00003 672 NCBIfam PAS domain S-box protein 101 213 IPR000014 -
Sebi664g00003 672 SUPERFAMILY PYP-like sensor domain (PAS domain) 107 210 IPR035965 -
Sebi664g00003 672 Coils Coil 6 33 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 275 293 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 228 249 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 355 409 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 294 310 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 8 41 - -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 1 96 - -
Sebi664g00003 672 Pfam Protein tyrosine and serine/threonine kinase 484 583 IPR001245 GO:0004672|GO:0006468
Sebi664g00003 672 ProSiteProfiles Protein kinase domain profile. 178 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi664g00003 672 SMART pas_2 103 170 IPR000014 -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 65 80 - -
Sebi664g00003 672 CDD PAS 112 213 IPR000014 -
Sebi664g00003 672 MobiDBLite consensus disorder prediction 361 387 - -
Sebi664g00003 672 ProSiteProfiles PAS repeat profile. 101 172 IPR000014 -
Sebi664g00003 672 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 484 583 - -
Sebi664g00003 672 Pfam PAS fold 104 211 IPR013767 GO:0006355
Sebi664g00003 672 SUPERFAMILY Protein kinase-like (PK-like) 440 582 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi664g00003 Sebi-Chr664 21594 27533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi664g00003 484 583 MAP Kinase Kinase Kinase AT3G06620 82.000 5.94e-53 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Sebi664g00003 PK_Tyr_Ser-Thr 2.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi664g00003 - - gmx:100800867 707.597