Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi661g00003 ATGAAGAAACCACCATCTTCCTCCTCCGTCAATGTCACCCTCGCCGTCATAGTTATACTCTCTTTTCTTCCCTCCTCTTATGCTCTAGGCTCCGCCACCACCCTGGCCGTCACCGACGCCTCCGCCACCGTATGCGGCATCGTAGCAGGGGAATCCACACAGCGCATTGAGTGTTACCGTCACGAGCAGATCGTTCCCGTCGTCCCCAACGTTTCCTTTTCCTCCATTTCCGGCGGGAGGGACTATTTCTGCGGCCTCAGGTCCGTTGGGGATGACCAAGTTTGCGCCACGGTGGTGGGTACTGGAACGGTTGAATGTTGGAGAACCAATAGGGCTTTTAATTTGTCATCTGGGTCTGATCAATTTGCTTCGATTTCATCTGGGTATGGTTTCTCTTGTGGAATTCTTAGGAATAGTTCTCGGGTTCAGTGTTGGGGAGAGATGGGTATGGCTAATCGGATAGAGAATGAGTTTGGGAACATGTCTATGTTGAGTCTTGTAGCTGGTGGTTCACATGTTTGTGGGTTGAATTCAACAGGGGTTTTGGTATGCAGAGGAAGTAACAGTTCTGGGCAATTGAATGTTCCCCAAGGTGGGGCTTTTGAGTATGATGGGTTAGCACTAGGAGCTGAGCATGGTTGTGCTATTAGAAGATTGAATGGTTCTGTTGTTTGTTGGGGTGGTAGAGGGCAATTCTCTGTGAATGTTACACAAGGAGTTTCTTTTGAGTTGATTGTTTCTGGGTCCAATTTTACTTGTGGATTGACAACAAGCAATTTTTCAGTGTTGTGTTGGGGCCCTGCTTGGTCTAATGGTAATGGTTCTAGTTCAAGGTTTGAGCTTCCTTTGCCTCGTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGTTTATTGCTTATGGAGTGGAGTTTGTTTTGGTAAGAAGAAAGTGCACAATTCTGTGCAACCAACAATCACTAGAGGTAGCAGCAATTCTAGTGGTGGTGGTGCTTCCAATCATAGCCCATCTTCAATAGCATCCACTATTAGGCGTCAGAGTTCAAGAATAATGAGGCGCCAGAGGAGTGGAACCTCATCAACAAAGCACCCAGAAAGGGCTGAAGAGTTCACCCTTTCTGAGCTTATAACAGCCACCAACAATTTCTCACTTGAGAACAAGATTGGTGCTGGAAGCTTTGGTGTTGTGTACAAAGGCAAACTCACAGATGGTCGTGAGGTAGCAATCAAGAGAGGTGAAACAGGTTCAAAGATGAAGAAGTATCAAGAGAAAGAAAGTGCATTTGAGTCTGAAATTGCCTTCTTGTCACGTTTACACCATAAGCACTTGGTTAGGCTAGTTGGGTACTGTGAAGAGAAAGATGAGAGGCTATTGGTGTATGAGTACATGAAGAATGGAGCATTATATGATCATTTGCATGACAAGAACAATGTGGAAAAGGGTAGCAGTGTCTTGAATTCATGGAAAATGAGGATCAAAATTGCTTTGGATGCTTCAAGAGGAATAGAATATCTACATAACTATGCAGTTCCATCTATAATTCATAGAGATATCAAGTCTTCAAACATCCTTATTGATGCAACTTGGACAGCAAGAGTATCTGATTTTGGATTGTCATTGATGAGTCCAGAATCTGACAGTGAATACAAACCAACAAAAGCAGCAGGAACTCTTGGATACATTGATCCTGAGTACTATGGTCTAAATGTGTTAACAGCAAAGAGTGATGTCTATGGGCTTGGAGTTGTACTACTAGAACTTTTAACAGGAAAGAGAGCTGTATTCAAGCATGGTGAAGATCCATTAAGTGTGGTGGACTTTGCAGTGCCTGCAATTTTGGCTGGAGAATTGGTGAAAATTTTGGACCCAAGGGTTGGTCCACCAGAGTCAAATGAAGCAGAAGCAGTGGAGTTAGTGGCTTATATTGCTATGAATTGTGTGAATTTGGAAGGGAAAGATAGACCAACGATAGCTGATATTGTGGCCAATTTGGAGCGGGCTTTGGTTATTTGTGATGGTAGCCATGACAGCATTTCCAGCATTGCAATCTCTGTTGTTTCAGATTGA 2076 0.4398 MKKPPSSSSVNVTLAVIVILSFLPSSYALGSATTLAVTDASATVCGIVAGESTQRIECYRHEQIVPVVPNVSFSSISGGRDYFCGLRSVGDDQVCATVVGTGTVECWRTNRAFNLSSGSDQFASISSGYGFSCGILRNSSRVQCWGEMGMANRIENEFGNMSMLSLVAGGSHVCGLNSTGVLVCRGSNSSGQLNVPQGGAFEYDGLALGAEHGCAIRRLNGSVVCWGGRGQFSVNVTQGVSFELIVSGSNFTCGLTTSNFSVLCWGPAWSNGNGSSSRFELPLPRILPGPCVQSSCSECVYCLWSGVCFGKKKVHNSVQPTITRGSSNSSGGGASNHSPSSIASTIRRQSSRIMRRQRSGTSSTKHPERAEEFTLSELITATNNFSLENKIGAGSFGVVYKGKLTDGREVAIKRGETGSKMKKYQEKESAFESEIAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYDHLHDKNNVEKGSSVLNSWKMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSLMSPESDSEYKPTKAAGTLGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAVFKHGEDPLSVVDFAVPAILAGELVKILDPRVGPPESNEAEAVELVAYIAMNCVNLEGKDRPTIADIVANLERALVICDGSHDSISSIAISVVSD 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi661g00003 691 SUPERFAMILY Protein kinase-like (PK-like) 363 667 IPR011009 -
Sebi661g00003 691 SUPERFAMILY RCC1/BLIP-II 25 228 IPR009091 -
Sebi661g00003 691 MobiDBLite consensus disorder prediction 320 360 - -
Sebi661g00003 691 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Sebi661g00003 691 MobiDBLite consensus disorder prediction 320 371 - -
Sebi661g00003 691 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 160 677 IPR044815 GO:0004674
Sebi661g00003 691 ProSiteProfiles Protein kinase domain profile. 385 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi661g00003 691 SMART serkin_6 385 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi661g00003 691 Gene3D - 161 346 IPR009091 -
Sebi661g00003 691 Gene3D - 23 160 IPR009091 -
Sebi661g00003 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Sebi661g00003 691 FunFam serine/threonine-protein kinase-like protein CCR1 354 465 - -
Sebi661g00003 691 Gene3D Transferase(Phosphotransferase) domain 1 466 679 - -
Sebi661g00003 691 FunFam Serine/threonine-protein kinase-like protein CCR4 466 684 - -
Sebi661g00003 691 Pfam Protein kinase domain 386 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi661g00003 691 Gene3D Phosphorylase Kinase; domain 1 347 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi661g00003 Sebi-Chr661 97807 100202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi661g00003 300 691 Receptor kinase-like Gene Family AT3G55950 72.167 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Sebi661g00003 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi661g00003 - - qsa:O6P43_013857 964.911