Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi660g00024 ATGATGACAACAACTGTGCGTGATAAGCCATCTTTGTCAAGGAATGGTCCTCCTATTGAATCAGTTTTGAACAGTCAAGGGGATGATTGTAGTCCAAATTATGTGTCTAGTGTTATTTGTAAGGAAGTGGGTGATGTTAATCTGATCGAGGTTCCAATTGAAATACAAACAATAGGTGGTGATGAGTCAGATGATCCAGACTATGTGGCAGATGATGATAATTTCAATGAAGAGTTTGAGGACTTCATTGACACATCAGAGGATGAAGGAGAGGACATATATGACACTTTGAGGGATCCGATGCTACTTAAAGAAGTGAATTGTTGGATGTATAAAAAACCTACAACCACGGGGTCTTCCATAAGACAAGGGAGTCAATCCAAAAGTATAGACAATGTCGAACAAGTCTCTGACTATGGGGATAGTGATGAGCTAGTAAGCCTCAATGGAAGTGATAGCTCGGATGATGACTTTGTGACAAAATGGCCTGAATTTAATGAGAAAACTGATTTGCATGATGAAGTAGAGCTAATGAAGGGAATGAAATTTGACTCTAATGTCACATTTAGAAAGGCCCTTATAGAGTGGACCATCAAGAGAGGTTATGATATTAAATACATTCATAATGACAAAAGCAGAGTCACTGCCATATGCAAGGATGGATGTGGATGGAGAATTCATGCTTCTCAAACACAAAACAACTTATGCTTCCAAATTAAAAGTTTCAACCCAATTCATCAATGTGGAAGACATTATGAAAACAAGAGGGTGACAACAAAGTGGGTTGCAAATAAGTACTTGGAAAATTTTCGGGATTCACCAAATTGGGAGGCTACCAGTTTGAAATATGCTTTACAAAGGGACCACAAGGAGGCAAGAGACAAACCTATCATTACAATGTTAGAGATGATTAGAAGACAATTAATGAAGAGATTTCATGTGAAGAGGGATGGAATGGTAGCCCGTAGACACTCAATATGCCCTAGAATACTTGAGAAGTTGGAAGTCTCTAAGAAAGATGCAATGAATTGTATAGTGTATGTTGGAGGGGATAGAACATTTGAGAGAGGAAGACCGGAAAATTATGTGGATGGAATCTTCTCAAAAGAAACTTTCTTGAAAACATATGATTGGCATATTCATCCTGTGCTTGGAGAAGAAGATTGGCCTGAGTGCAACTATGATAAGATCATACCTCCAAATGTAAAGGTTGCACCGGGTAGGCCCAAAAAGAAAAGAATCAGAGAAGAGGGAGAGCCTTCTAATGCACACAAGATTAGCAAGAAAGGCACCAAAATTAAGTGTGGTAATTGCAAGAAGGAAGGACACAATGCTAAAACATGCAAAATGCCTTTGAATCCAAATAGAAAGTCCACCCGGTGGACCGAGTCTTCCTCCATTGGCTACCCCACTCACTCCACCACCCAATCAGCTTTCGCCAAGTGGACAACCCGCGCCACCGACAATCACTTCCACGCGGCGGTGGACGACACCGCTCAGTGGCTCCTCAAGTACATCCTTTTCACAGTCCCATATCTCCACGACATCGAGAGTTCTCCCCAAACCCGAGACGCAACCACCGCCGTATCAGGCGATCCCGCCGCTCGGTTACGCGGCAAGGGGACGCCGCAAGACGAGCTGAGCGCCAACCACGTCCTGGCGGAGCGCCGGCGCCGCGAGAAGCTGAACGAGAGGTTCATCATTCTGAGGTCCCTTGTACCCTTCGTAACGAAAATGGACAAGGCTTCCATACTAGGAGACACCATAGAATACGTGAAACATGGCATAGTTGTCGTCCCCGTCGACGATTTCGCTTCTCAATTCCTTCTTGTCGGCGTTGAACGACAGCTATTGTTTCCTGATGAGCCTCTTGCCATATTGATGAACGAGCAGCGGCCAGGTCGGTGA 1908 0.4382 MMTTTVRDKPSLSRNGPPIESVLNSQGDDCSPNYVSSVICKEVGDVNLIEVPIEIQTIGGDESDDPDYVADDDNFNEEFEDFIDTSEDEGEDIYDTLRDPMLLKEVNCWMYKKPTTTGSSIRQGSQSKSIDNVEQVSDYGDSDELVSLNGSDSSDDDFVTKWPEFNEKTDLHDEVELMKGMKFDSNVTFRKALIEWTIKRGYDIKYIHNDKSRVTAICKDGCGWRIHASQTQNNLCFQIKSFNPIHQCGRHYENKRVTTKWVANKYLENFRDSPNWEATSLKYALQRDHKEARDKPIITMLEMIRRQLMKRFHVKRDGMVARRHSICPRILEKLEVSKKDAMNCIVYVGGDRTFERGRPENYVDGIFSKETFLKTYDWHIHPVLGEEDWPECNYDKIIPPNVKVAPGRPKKKRIREEGEPSNAHKISKKGTKIKCGNCKKEGHNAKTCKMPLNPNRKSTRWTESSSIGYPTHSTTQSAFAKWTTRATDNHFHAAVDDTAQWLLKYILFTVPYLHDIESSPQTRDATTAVSGDPAARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKHGIVVVPVDDFASQFLLVGVERQLLFPDEPLAILMNEQRPGR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi660g00024 635 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 546 595 IPR011598 GO:0046983
Sebi660g00024 635 Pfam Helix-loop-helix DNA-binding domain 549 594 IPR011598 GO:0046983
Sebi660g00024 635 MobiDBLite consensus disorder prediction 449 469 - -
Sebi660g00024 635 MobiDBLite consensus disorder prediction 1 27 - -
Sebi660g00024 635 SMART finulus 552 601 IPR011598 GO:0046983
Sebi660g00024 635 MobiDBLite consensus disorder prediction 451 469 - -
Sebi660g00024 635 MobiDBLite consensus disorder prediction 521 546 - -
Sebi660g00024 635 Gene3D - 544 596 IPR036638 GO:0046983
Sebi660g00024 635 MobiDBLite consensus disorder prediction 403 428 - -
Sebi660g00024 635 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 546 594 IPR036638 GO:0046983
Sebi660g00024 635 Pfam MuDR family transposase 175 239 IPR004332 -
Sebi660g00024 635 MobiDBLite consensus disorder prediction 410 426 - -
Sebi660g00024 635 PANTHER TRANSCRIPTION FACTOR TT8 440 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi660g00024 Sebi-Chr660 514850 519305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi660g00024 431 594 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 42.073 3.46e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi660g00024 DBD_Tnp_Mut 1.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi660g00024 - - dzi:111305184 189.119