Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi660g00014 ATGGCTTCAAATAGTCCACACATGAGTATACCTTGTTCACCAAAGATTGGGGGAAGATTGTGTAAGCCGCGGGTTGTGGGATTGGAGAAGGGAAGGTTGGGTTGGAATTTGAATTTGGGTGAGTGGGGTGGTTTGGGCGTTGGACGGTATTTGGGTGATTTGGATTTGGGTGATTGGGGTGGTTTGGGCGGTGGATTGGTTTGTTGGATTGGGACGGAGCATGCTGCTGAGTATGTTAAGCAGGCAGTTCATGAGCATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTAGAATATTTAAGGGCCCATTTGAAGTATGAGAAGAATCCCAAGATCAAGGAGGCAATAACTCAGAAATTTGCTCAATACTTGAGGAGGGCCGAGGAGATTAGTGCCATTCTTGATGCAGGAGGTAGTAAACCAAACTTGAATAGAGAAGCAGCAGATTCTGTAAGACCAAAGACAAAGACAAATAGTGGAGTAGAGAAAGACAAGGAGGATCCTGAGCAAGCAAAGCTGAGGGCTGGTCTTGATTCTGTTATAATCAAAGAGAAACCAAATGTCAGATGGAGTGACATTGCTGGCCTTGAGAATGCCAAACAGGCATTACAAGAGGCTGTAATATTGCCTGTTAAGTTCCCACAATTTTTCACTGGTAAAAGACAACCATGGAGAGCATTTTTATTGTATGGTCCACCTGGAACAGGGAAATCATTCTTAGCAAAGGCAGTAGCAACAGAAGCAGACTCTACATTCTTCAGTGTTTCATCATCAGATCTTGTTTCTAAGTGGATGGGTGAAAGTGAAAAGTTGGTTTCAAATCTTTTCCAAATGGCTCGTGATAATGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGTCAACGAGGTGAAGGCAATGAAACTGAAGCATCTAGAAGAATCAAAACTGAACTTCTAGTGCAAATGCAGGGTGTGGGACACAATGATCAGAAAGTTCTCATTCTTGCAGCCACAAATACTCCATATGCTCTGGATCAGGCCATTCGACGACGCTTTGACAAAAGGATATACATCCCTCTCCCAGACCTGAAGGCAAGGCAGCACATATTTAAGGTGCATCTTGGAGATACTCCTCATAACCTAACTGAAAAAGATTTTGAAGAATTGGCACAAAAAACAGATGGATTTTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTACTATTTGAACCTGTCCGTAAAACACGAGATGCTAAATTCTTCAGGAAAACCTCTAAAGGAATGTGGGTTCCTTGTGAACCTACTAAACGAGGAGCTGTTAATATTAGCCTGGAGGAACTTGATGCACACGGCCTTGCTTCAAAGATTCTTCCACCACCCATCACCAGAGCAGATTTTGATAAAGTATTAGCCAGACAAAAGCCAACTGTTAGTAAAGCTGATCTCGAGGTGCATGAGAGATTCACCCAAGAGTTTGGAGAGGAGGGATGA 1500 0.4207 MASNSPHMSIPCSPKIGGRLCKPRVVGLEKGRLGWNLNLGEWGGLGVGRYLGDLDLGDWGGLGGGLVCWIGTEHAAEYVKQAVHEHDAGNYKKAFTLYMNALEYLRAHLKYEKNPKIKEAITQKFAQYLRRAEEISAILDAGGSKPNLNREAADSVRPKTKTNSGVEKDKEDPEQAKLRAGLDSVIIKEKPNVRWSDIAGLENAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSFLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARDNAPSIIFIDEIDSLCGQRGEGNETEASRRIKTELLVQMQGVGHNDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHIFKVHLGDTPHNLTEKDFEELAQKTDGFSGSDISVCVKDVLFEPVRKTRDAKFFRKTSKGMWVPCEPTKRGAVNISLEELDAHGLASKILPPPITRADFDKVLARQKPTVSKADLEVHERFTQEFGEEG 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi660g00014 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 482 IPR027417 -
Sebi660g00014 499 ProSitePatterns AAA-protein family signature. 334 353 IPR003960 GO:0005524|GO:0016887
Sebi660g00014 499 SMART AAA_5 228 364 IPR003593 GO:0016887
Sebi660g00014 499 Gene3D - 364 479 - -
Sebi660g00014 499 Pfam ATPase family associated with various cellular activities (AAA) 233 362 IPR003959 GO:0005524|GO:0016887
Sebi660g00014 499 Gene3D - 71 141 - -
Sebi660g00014 499 CDD RecA-like_VPS4 190 360 - -
Sebi660g00014 499 FunFam vacuolar protein sorting-associated protein 4A 364 479 - -
Sebi660g00014 499 FunFam Vacuolar protein sorting-associated protein 4 191 371 - -
Sebi660g00014 499 MobiDBLite consensus disorder prediction 152 175 - -
Sebi660g00014 499 MobiDBLite consensus disorder prediction 146 175 - -
Sebi660g00014 499 FunFam Suppressor of K+ transport growth defect 1 72 141 - -
Sebi660g00014 499 Pfam Vps4 C terminal oligomerisation domain 432 496 IPR015415 -
Sebi660g00014 499 Pfam MIT (microtubule interacting and transport) domain 74 136 IPR007330 -
Sebi660g00014 499 SMART smart 73 146 IPR007330 -
Sebi660g00014 499 SUPERFAMILY MIT domain 74 149 IPR036181 -
Sebi660g00014 499 Gene3D - 191 487 IPR027417 -
Sebi660g00014 499 PANTHER AAA DOMAIN-CONTAINING 89 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi660g00014 Sebi-Chr660 374793 399971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi660g00014 227 420 Calmodulin-binding Proteins AT3G56690 36.735 1.52e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi660g00014 K12196 - csav:115706151 725.702