Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi65g00078 ATGATGGAAAAGAGAAACTTTTCTGAATTCATATCAGAGCTAATAGCTCTGGGCGATGAGGTTGTTTCGTTTACTAAGAATCATGAAATTGTCATAGACGCTTTTTCTCAGTTTGCCATGTTGGTTGAGAAATTTGCACCAATCTTCAATGATTTGAGGAACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAGTCGTTGGAATCTCTTGAGAATGAGCTTCACCGTGCTAAAGTTTTGATCAAAAGTCACCATTTGGGAGAGCCTATCCAACAAATTGAGGACATAACGCATGATCTTGGTCGATCATTAGGCCTGCTCCTTGTGGCTAGTCTTGAACTTGAAGTGTCCATAAGTTTTAGAGAAAAGATTAGTACATTGCAAAAACAGTTGATGAATGCAAGATTTGGTGGGAATACCAATCTAACTTCAAGTCCAATATCAAAGTTTGTCATTGCCAGTGATGTGAAGGTGGAAGGGGAAATAGAAGAGGAAATAATTAATGTTACTATTGATGATATTGTACTGCAACTTAAGAATGGTGATGCTGAAGAATTTGCAGTTGCACTTTTAAGACTAAAGAAGTTCATCAGGGATGGACAACTGGATAGTAGTGTAATTAATGAGGAAGCTGTTCTTTTAATTCTTTTTAATCGTCTAAGTTCATGTAAGGCATATAGGCTGACCATCATTCAATTGCTACGAAGCATTGCTTTGGGAAATGATGAGACAAAGGAGAAGATGACAGATATTGAGTTTTTATCAGCAGTGGTGAAGTCTCTAGCAAGGGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGTTGTTAGAGCTCTCTCACATTCCTGCAGTTAGACGGCATATTGGAAGAATTAAGGGGTGTATTGTTATGTTAGTTTCTATCCTGAATGGAATTGACCCTGTTGCTTCAAATGATGCAGCAAAGTTGTTGGATATATTATCCAGTAATACTCAAAATGCACTCAATATGGCTGAGGCTGGTTACTTTAGGCCACTAGTGCAGTATTTGAAGAAAGGGTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGATGCTTACTGATCATAGCAAGCTTTCCCTTGGACGAGATGGGGCAATTGAGTCCCTTGTCAAAATGTTTAATTCTGGGAAACTTGAGTCCAAGTTATCTGCTCTAAATGCACTGCAAAATCTTTCCAGTTTGACAGAAAATGTGCAGCGTCTCATCAGAACTGGAATTGCAGGATCTCTACTGCAACTTCTTTTTTCTGTAACATCTGTGCTCATGATTCTGCGGGAGCCTGCATCAGCTATTCTTGCAAGCATTGCTCAGTCAGAATCCTTTCTTGTTAATCAAGATGTGTCTCAACAAATGCTTTCACTTTTGAATCTTACCTGCCCAGTAATTCAAGGTAATCTTTTAGAAGCTCTAAATAGCATTGCTTCCCATCCTGGTGCTTCTAAAGTGAGAAGAAAAATGAAGGAAAAATGTGCACTTGAGCTAATTTTACCCCTTCTGAAGGAAACCAGAACTGAAATACGGAGCAAGGCCTTGAATTTGCTGTATACTCTCTCCAAAGATCTAACAGATGAGTTGAGTGAACATCTTGATGAAGCTCATCTTTTCAACATTGTTAATATTGTCTCATCAACAACATCAGATAGTGAAAAGTCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTCATGATAATAAAGTGACAGATGCACTGAAGAGAGCAAATTTGTTGCCACTTTTAGTATCCATTATGGATTCAAGCACAGGAAGTAACTCGCGCACAAGATGCAGCATAATGGAGAGTATTGCAGGTATTATAATCCGATTCACACGTTCCTCTGACAAGAAACTACAACGTCTTTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCAACAATCACAAAATTCAGAGCTGCAACCTCTCTGGCTCAACTATCACAGAATTCTGTGTCTCTTAAGAGGTCTAAGAAGTCAAGGTGGTTGTGTGTTCCTCCCTCAATGGATGCATACTGTGAAGTTCATGATGGCTATTGCTTTGTGAACAGCACATTTTGTTTGGTCAAGGCAGGTGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATGAGGAAGCAGTGGAAGCTGCCCTTATTTCCCTTTCAACTCTCTTGCAAGATGAAATCTGGGAAGGTGGTGTTAATTGCATAGCTAAATTGTCAGGTGTAGAGGCTATTGTAAAAATTTTAGCAGTAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATAAAATATGGAGAATCCGCTCAGGTGGTTCTTATTGATTTGGCACAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGTTGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGA 2493 0.3959 MMEKRNFSEFISELIALGDEVVSFTKNHEIVIDAFSQFAMLVEKFAPIFNDLRNKSTIMDKPAIRKSLESLENELHRAKVLIKSHHLGEPIQQIEDITHDLGRSLGLLLVASLELEVSISFREKISTLQKQLMNARFGGNTNLTSSPISKFVIASDVKVEGEIEEEIINVTIDDIVLQLKNGDAEEFAVALLRLKKFIRDGQLDSSVINEEAVLLILFNRLSSCKAYRLTIIQLLRSIALGNDETKEKMTDIEFLSAVVKSLARDAEERREAVGLLLELSHIPAVRRHIGRIKGCIVMLVSILNGIDPVASNDAAKLLDILSSNTQNALNMAEAGYFRPLVQYLKKGSDMNKILMATALSRLMLTDHSKLSLGRDGAIESLVKMFNSGKLESKLSALNALQNLSSLTENVQRLIRTGIAGSLLQLLFSVTSVLMILREPASAILASIAQSESFLVNQDVSQQMLSLLNLTCPVIQGNLLEALNSIASHPGASKVRRKMKEKCALELILPLLKETRTEIRSKALNLLYTLSKDLTDELSEHLDEAHLFNIVNIVSSTTSDSEKSAAVGILSNLPVHDNKVTDALKRANLLPLLVSIMDSSTGSNSRTRCSIMESIAGIIIRFTRSSDKKLQRLSAEHGVIPLLVKLLSSGSTITKFRAATSLAQLSQNSVSLKRSKKSRWLCVPPSMDAYCEVHDGYCFVNSTFCLVKAGAVSPLIQILEDKDEEAVEAALISLSTLLQDEIWEGGVNCIAKLSGVEAIVKILAVGDVKVQEKALWMLERIFRVEEHRIKYGESAQVVLIDLAQKSDSRLKSTVAKVLAVLELLQAQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi65g00078 830 Gene3D - 173 492 IPR011989 -
Sebi65g00078 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Sebi65g00078 830 SUPERFAMILY ARM repeat 339 785 IPR016024 -
Sebi65g00078 830 Gene3D - 695 828 IPR011989 -
Sebi65g00078 830 SUPERFAMILY ARM repeat 171 426 IPR016024 -
Sebi65g00078 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 143 830 - -
Sebi65g00078 830 Gene3D - 493 678 IPR011989 -
Sebi65g00078 830 SMART arm_5 491 531 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 626 666 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 698 738 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 324 364 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 365 405 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 576 623 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 242 281 IPR000225 GO:0005515
Sebi65g00078 830 SMART arm_5 742 782 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi65g00078 Sebi-Chr65 1746683 1750279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi65g00078 182 830 U-box Gene Family AT1G76390 28.736 9.66e-47 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi65g00078 K08332 - gmx:102659538 1180.62