Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi65g00075 ATGAAGTTCTGCAAAAAATACCAAGCGTACATGCAAGGCCAGGAGAAGAAGCTTCCAGGGGTTGGCTTCAAGAAACTCAAGAAGATCTTGAAGAAGTGCAGGAATGACCGTGAATACCACAAAGGCCTCAATAATCATAATCCATCCCTTGGCAACAGAACCTGTCCTGACCATTGCCCAGTGTGCGATGGGACATTCTTCCCTTCCCTTCTCAATGAAATGTCAGTTATAGTAGGCTGCTTCAATCAGCATGCGAAGAAATTGCTTGAGCTACATCTCGCTTCTGGCTTCAGAAAGTACCTTTTATGGTTCAAAGGCAAATTACAAGGGAACCATACTGATCTAATTCAAGAAGGCAAAGATCTGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCACAGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGCGAGCTTATGGCATTCCACATCAATTTAAGGGAAACTAATCACAAGTCAAGAAACGCATCTTCTTTGTTCGATGAATGTTCTCTTACATTTAAGGATGGAAAGCCATCTCTTACCTGTCACCTCTTTGATTCTATCAAAATTGATATTGACTTGACTTGTTCTATTTGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATTTTCTGCTATGTTTGTGCCTGCTCAGCAGCATCAGTATCTATTGTTGATGGACTTAAGGCAGCAGATCCTAAACAGAAATGTCCTCTATGTCGAGAGGGTGCAGTTTATAAAGGTGTTGTGCACTTGGATGAACTAAATATTTTATTAGGCCGAAGCTGTCGTGAATATTGGGAGCAAAGGCTTCAGACAGAGAGGGTAGAGAGGATCAAGCAAATAAAGGAACACTGGGAATCACAGTGTAGGGCATTAACTGGCATCTAA 924 0.4199 MKFCKKYQAYMQGQEKKLPGVGFKKLKKILKKCRNDREYHKGLNNHNPSLGNRTCPDHCPVCDGTFFPSLLNEMSVIVGCFNQHAKKLLELHLASGFRKYLLWFKGKLQGNHTDLIQEGKDLIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETNHKSRNASSLFDECSLTFKDGKPSLTCHLFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYVCACSAASVSIVDGLKAADPKQKCPLCREGAVYKGVVHLDELNILLGRSCREYWEQRLQTERVERIKQIKEHWESQCRALTGI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi65g00075 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 305 IPR013083 -
Sebi65g00075 307 CDD RING-HC_BAH1-like 193 266 - -
Sebi65g00075 307 SMART ring_2 203 251 IPR001841 -
Sebi65g00075 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 121 306 IPR033326 -
Sebi65g00075 307 SUPERFAMILY RING/U-box 196 255 - -
Sebi65g00075 307 ProSitePatterns Zinc finger RING-type signature. 218 227 IPR017907 -
Sebi65g00075 307 ProSiteProfiles Zinc finger RING-type profile. 203 252 IPR001841 -
Sebi65g00075 307 Pfam Zinc finger, C3HC4 type (RING finger) 200 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi65g00075 Sebi-Chr65 1730142 1732290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi65g00075 200 252 C3H Transcription Factor Family AT4G28270 41.379 2.24e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi65g00075 K16275 - gmx:100787904 531.561