Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi65g00058 ATGAGTGCTCAACCTTTTTCGTCTCTGGGATTGTCTGAACCTACTTCTAAGGCTATTATGGATATGAGTTTCCACCATATGACTCAGATTCAAGCGAGAGCAATTCCGCCTCTTCTGATGGGAAAGGACGTTCTTGGTGCTGCGAGGACAGGTAGAAGGGGAGAAGCAGAGCGCATTGTTAAAGGGGTAAATCTGTTGGTAGCAACTCCTGGTCGCCTCCTCGATCACCTTCAGAATACTAACGGATTCATATATAAAAACTTGAAGTGTCTCATGATTGATGAGGCAGACAGGATATTGGAAGCAAACTTCGAGGAGGAAATGAAGCAGATCATCAATATACTTCCAAAGGTTAAGGATCTTGCCCGTTTGTCATTTCAAACAACTCCCATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTTCATGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCGTGCAACTCTGTCAGATTCCATGCAGATCTTCTCAAGTGTACTGGGTTAGACTGCTTAAATATTCATGGAAAACAGAAGCAGCATGCCAGGACAACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCAGCTCGTGGGCTCGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAAGGAAATGCTTTACTTTTCTTGATTCCTGAAGAATTGAAATTTCTTCGCTATTGA 864 0.4248 MSAQPFSSLGLSEPTSKAIMDMSFHHMTQIQARAIPPLLMGKDVLGAARTGRRGEAERIVKGVNLLVATPGRLLDHLQNTNGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKVKDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVSCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVRFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLRY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi65g00058 287 SMART helicmild6 186 267 IPR001650 -
Sebi65g00058 287 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 148 IPR014001 -
Sebi65g00058 287 Pfam Helicase conserved C-terminal domain 162 266 IPR001650 -
Sebi65g00058 287 PANTHER RNA HELICASE 4 51 - -
Sebi65g00058 287 CDD SF2_C_DEAD 147 277 - -
Sebi65g00058 287 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 92 100 IPR000629 -
Sebi65g00058 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 286 IPR027417 -
Sebi65g00058 287 Gene3D - 53 146 IPR027417 -
Sebi65g00058 287 Gene3D - 1 52 IPR027417 -
Sebi65g00058 287 Pfam DEAD/DEAH box helicase 55 123 IPR011545 GO:0003676|GO:0005524
Sebi65g00058 287 Gene3D - 147 287 IPR027417 -
Sebi65g00058 287 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 4 32 IPR014014 GO:0003724
Sebi65g00058 287 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 162 287 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi65g00058 Sebi-Chr65 1505821 1509216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi65g00058 11 286 Eukaryotic Initiation Factors Gene Family AT3G19760 26.207 5.95e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi65g00058 K13179 - gmx:100793807 461.07