Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi65g00054 ATGGAGCCCATGGACATCGTTGCAAAAACAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATTAAAGAGATGTTGCCCCCGGATGTGCGTGTCGCAAGAGATGCCCAGGATTTATTGATCGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCATCAGAGTCCAATGAAGTCTGTAACAGAGAGGAAAGAAGGACGATTGCTCCTGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAAGAAGTTTATGCAGCATATGAACAGCACAAGCTGGAGACAATGCACGACTCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCCGAGATGACTGAGGAAGAAGCATTAGCTGAGCAGCAAAGGATGTTTGCAGAAGCACGTGCTAGAATGAATGGAGGGGCCATTACTTCCAAACAGCCAGATGCTGACCAAAGTTTAGAGAGCTAA 471 0.4544 MEPMDIVAKTKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMHDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi65g00054 156 Coils Coil 115 135 - -
Sebi65g00054 156 FunFam Negative cofactor 2 beta 6 143 - -
Sebi65g00054 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Sebi65g00054 156 MobiDBLite consensus disorder prediction 137 156 - -
Sebi65g00054 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Sebi65g00054 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Sebi65g00054 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi65g00054 Sebi-Chr65 1453489 1457569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi65g00054 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 80.519 1.56e-90 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sebi65g00054 CBFD_NFYB_HMF 1.6e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi65g00054 K21751 - gmx:547635 296.589