Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi65g00035 ATGAAAGTGAGGTCGGTGAAGCTGAGGGAGGCCCACGCACACAAGGGTGGCCGCCCTTCGTTCTGTTCCGTGGTGTGGGACCAGCAAGCCCAACATCTGGTTACCGCCTCCTCTTCCGATGTGTCCGTTTCCATTCACAATCCCATTCTCCCCTCCGCCACTCCAAGGATCCTCCGTCACCACCGTGACGGCGTCACTGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTTGCTTCCGGATCCGTCGATCACTCCGTCAAGCTCTACAAGTTTCCTGGTGGGGAGTTCGAGACAAATATTACCAGATTCACACTTCCAATACGTTCCCTAGCATTTAACAAGTCAGGGAGTATGTTAGCAGCGGCTGGTGATGATGAGGGTATCAAGCTTATTAACACAGTTGATGGTTCCATTGCTAGGGTCCTCAAAGGGCATAAAGGGCCTGTCACTGGCCTAGCTTTTGACCCCAATGGTGAATACTTAGCATCTCTGGATTCAACTGGAACTGTTATTCTCTGGGAACTCCACTCTGGGAGAATCGTTCACAACCTCAAAGGCATCGCTCCTGACACTGGGGTAGATGTTACAACCATGAATGTTCTTTGTTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCCGGGTTGAGAAACGACGTCGTAATGTATGATAGGGACACGGCTGAGAAGTTGTTTTCTCTGAGAGGGGATCACACACAACCTATATGTTTCTTGTGTTGGTCACCCAATGGGAAGTACATGGCTACTTCTGGTTTGGACAAGCAGCTTCTGATATGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAAGTTTGATGAAAGAGTGTGTTGTATGGCGTGGAAGCCAATTGGGAATGCCTTGGCTGTTATTGATGTTATGGGAAAGTATGGTATATGGGATAATGTTATTCCTTCATCTATGAAGTCTCCAACTGAGGATATACCTATGCAGTACAAGAACAGCAAAGGGCTTCTTTTGTTTGATGAGGAGGATCAAGAAAATAGTGCTAGTGGGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTCTGAGCCACCTAGCAAGAAAAGATTGCGAAAACAGGCTTTGAGCGAGGAAAATTTAGATGAGGATGAAGGTGATGAAATGACTCTGTTTCCCAAGGTTGAGTCTCACAAGAAACGAAATCGTTCCCACAAGGAAAATTTGGATAATGGGAATGTGGCATTTAGAAGTACCATGGTAACATCTAAGCCAAAGATGCAGGAGGCATTTCAACCAGGATCTACCCCTGTGCAGCCTGGGAAAAGGCGCTTCTTATGCTATAATATGCTTGGAAGTATAACCACTGTTGAACATGATGGATACTCTCACATTGAGATTGATTTTCATGATACTGGAAGCGGTCCACGAGTTCCATCAATGACTGATCATTTTGGATTTACAATGGCCGCATTAAATGAGAATGGAGGCGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTCGCACTTGGTGCTGCTTGGGTAGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGAGGGTGGTTTGCAGAGATATATTATTTCGCTAGATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTTCTGATTGCCTTTCCTCAAATGATCAGGTGTTAGAGTTTAGAGTATTTAATATACCCCATGGAACCCAACCCCTTCGAGGTCGCTTGCCATTAACTCCTGGTTCATCACTAAGTTGGTTTGGGTTTAGTGAAGAAGGTCAATTGTGTTCATACGATTCCAAGGGTGTGCTAAGGCAATATACTAGCCAATTTGGTGGTAGCTGGGTCCCAGTCTTCAGTGCTATTAAAGAGAAGTCAGATGAAAACTACTGGGTGACGGGGTTGAACTCAAGCAAGTTATTTTGTGTAATATGCAAAAAGCCTGATGCCTTCCCACAGGTGATGCCTAAACCTGTTCTCACTCTACTGAATCTTTCATTTCCTCTCGCTTCCTCTGATTTGGGATCTGAGGCTCTTGAAAACGAGTTTATAATGAATAACATGCATCTCTTTGAGATTCAGAAAAGAATGGAAGAAACGGCTATTGCTGGTTTAGACACTAATTCACTTGACGATGAAGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTCAGGCTTATAGCATCCTGCTGCAACAGTGATAAGCTTGAGCGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAAAAATCAATGAAAGGTGCAATAAAACTTGTAACTGCTCTGAAGCTTCCAAACTTGGCCGAAAGGTTCAGCAGTATATTGGAGGAAAGGTTACTTAATGAAGTTAGAAAAACAACCGAGACCAACCTCAAAGAAAAAAGTCTTGCACCCAATGCAGCTGATGCTCTATTAAGCGGAAGCAAGGCCTCAACTAAGTCTGAAACACCAAAAGAAGTTACCATGTCATCATCACCAAAATTATCAGCTCCTTTGTTTACAAAGAAAGACAAAACACATGGGGAAGCTAAAGCTGGGATTAATAAAACTGCATTGGTGAATAATGAAGGTGTGAAGGTAAAGCAGACACGTGATGAAACGAGTGACAAACGGGGGAAGGTGGAGGATATGCGTCAGGTTCATGCTCCTCCTCATCCACAAGATCCTTCTATTAAGTCGTCAAATAAACACGTAGTTAACAAGTCAGAGACTAGTTTGGCACAATCAACTCGGCCGTCTAATCCATTTTTGAAGTCTTCTATCAAGTGA 2886 0.4435 MKVRSVKLREAHAHKGGRPSFCSVVWDQQAQHLVTASSSDVSVSIHNPILPSATPRILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGLAFDPNGEYLASLDSTGTVILWELHSGRIVHNLKGIAPDTGVDVTTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHTQPICFLCWSPNGKYMATSGLDKQLLIWDVNRKQDIDRQKFDERVCCMAWKPIGNALAVIDVMGKYGIWDNVIPSSMKSPTEDIPMQYKNSKGLLLFDEEDQENSASGSLSDLGENSNGESEPPSKKRLRKQALSEENLDEDEGDEMTLFPKVESHKKRNRSHKENLDNGNVAFRSTMVTSKPKMQEAFQPGSTPVQPGKRRFLCYNMLGSITTVEHDGYSHIEIDFHDTGSGPRVPSMTDHFGFTMAALNENGGVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGAAWVAAVTSFNYLRIFTEGGLQRYIISLDGPVVTASGFKDKLAVVTHASDCLSSNDQVLEFRVFNIPHGTQPLRGRLPLTPGSSLSWFGFSEEGQLCSYDSKGVLRQYTSQFGGSWVPVFSAIKEKSDENYWVTGLNSSKLFCVICKKPDAFPQVMPKPVLTLLNLSFPLASSDLGSEALENEFIMNNMHLFEIQKRMEETAIAGLDTNSLDDEAFNLEAAQDRCILRLIASCCNSDKLERATELVKLLSLEKSMKGAIKLVTALKLPNLAERFSSILEERLLNEVRKTTETNLKEKSLAPNAADALLSGSKASTKSETPKEVTMSSSPKLSAPLFTKKDKTHGEAKAGINKTALVNNEGVKVKQTRDETSDKRGKVEDMRQVHAPPHPQDPSIKSSNKHVVNKSETSLAQSTRPSNPFLKSSIK 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi65g00035 961 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Sebi65g00035 961 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Sebi65g00035 961 MobiDBLite consensus disorder prediction 927 961 - -
Sebi65g00035 961 SUPERFAMILY WD40 repeat-like 22 307 IPR036322 GO:0005515
Sebi65g00035 961 Gene3D - 2 194 IPR015943 GO:0005515
Sebi65g00035 961 MobiDBLite consensus disorder prediction 844 869 - -
Sebi65g00035 961 CDD WD40 22 310 - -
Sebi65g00035 961 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Sebi65g00035 961 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Sebi65g00035 961 Gene3D - 195 308 IPR015943 GO:0005515
Sebi65g00035 961 MobiDBLite consensus disorder prediction 341 357 - -
Sebi65g00035 961 MobiDBLite consensus disorder prediction 898 921 - -
Sebi65g00035 961 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Sebi65g00035 961 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Sebi65g00035 961 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 958 - -
Sebi65g00035 961 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Sebi65g00035 961 SMART WD40_4 135 174 IPR001680 GO:0005515
Sebi65g00035 961 SMART WD40_4 269 307 IPR001680 GO:0005515
Sebi65g00035 961 SMART WD40_4 4 47 IPR001680 GO:0005515
Sebi65g00035 961 SMART WD40_4 177 223 IPR001680 GO:0005515
Sebi65g00035 961 SMART WD40_4 93 132 IPR001680 GO:0005515
Sebi65g00035 961 SMART WD40_4 51 90 IPR001680 GO:0005515
Sebi65g00035 961 SMART WD40_4 226 266 IPR001680 GO:0005515
Sebi65g00035 961 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Sebi65g00035 961 Pfam Minichromosome loss protein, Mcl1, middle region 425 706 IPR022100 -
Sebi65g00035 961 MobiDBLite consensus disorder prediction 382 404 - -
Sebi65g00035 961 MobiDBLite consensus disorder prediction 341 404 - -
Sebi65g00035 961 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Sebi65g00035 961 MobiDBLite consensus disorder prediction 358 374 - -
Sebi65g00035 961 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Sebi65g00035 961 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Sebi65g00035 961 MobiDBLite consensus disorder prediction 830 961 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi65g00035 59 269 U-box Gene Family AT2G33340 23.256 1.14e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi65g00035 K11274 - gmx:100809300 1540.78