Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi65g00013 ATGGAGTCTTGGAGTTATGTTCCTGAAGATAAAGGGTATGTCTCTAATGATTCCCTTTCGCCTCCCAACACTCTTGGGAGAAGCAAAGGTTCCTTCTTGGGTTGGGAACTGAAAACCCCATCTAGTTTTTCCAATGACATGTTGGCCTTAGGTCAGCATAACATTGAGAATCAAGGTTTTGAGGAATTGGGGTTTCCTGGAATGTTGGGGAAACAATTGTCTGATGATCCAATTGGTACTATTCAGAGCAGAAAGCTGGATAGTGGTGTTGATTGTAGAATTACTAGCTCTGTTGTGGCTACCCCAAATGCATTTTCTGCAAGAGAGGACTTCAATTCTAAGCTTTCAAACTCTAATGGCTACAATTCACTCATTGATTTAAAGCTGGGTAGATTTGCTGATCATGGGGATGCTATGGCTCCAACATTTTCCAAGGGTGCCCCTATTTTGTCTTCATCTGAGTCCTCAACACCCCCCAAGAGGGTGAGAGCTTCAGGGGTACATTCTCAGACTGCACACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGACATAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTGATAGTGAATGGCATTGAACAAAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTCGAAGAAAGCCACAAGTGGGTATTCACTCAGGAAAAGCTGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCCGGGGACTATGCTAACATCAGCATCTTTTATCTGCCAAGAGATACTCCCCAGTGGGGTCTTATCTTCTGAGAAATATGGAACAAGTGACTGGTGGAGACCTATAAAAGCTGAAGATGGCACTAGTTTCAGGCCTCTTTCTTCTATTCCAATTACCAATGGACATTCTCAATCAAGATCTCTATTTCCTTCATATAGTGAAAAACAATTCCCCTTTCTTCATGATAATGGTGCTACATCTGCTACTGGAAGCATCTTCTGTGAAAACAATAGTCAATATCCACCTGGCCTTGGGGGTTCCAATTCTGGCTCGCAATCATTATTCCAAGACACCTCCTTAGGAAACGAGGAGTTCAATGTTTTTGATACAGAATCAACTGTCCAAGGATTTTCGGGAATTTCAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCGTGGCTCGCCCCTTGGTTATTCCAAGCAGCCATAGCCATTACAACATGAGCCATGTTTCTGAAAAGTTGATAGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGACAGGTTCCCATCTGAATTGAATCCTGCAGATGGAAGTCATCTTAGTCCGATATTGATATCAGACAATAATGAAATTGTCAATTTTGAAATGGCAGATGGGATTTTCCAAGGATCAGATTTTGTGAATGTCAAAAATCGTCTTTCCTGTGAAGATGTCCCCACCATTGACTTGCTTCAACTGTCATCACAACTTCAGCGAGTCGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGCTCTCTCCGGATTACTTAA 1638 0.4322 MESWSYVPEDKGYVSNDSLSPPNTLGRSKGSFLGWELKTPSSFSNDMLALGQHNIENQGFEELGFPGMLGKQLSDDPIGTIQSRKLDSGVDCRITSSVVATPNAFSAREDFNSKLSNSNGYNSLIDLKLGRFADHGDAMAPTFSKGAPILSSSESSTPPKRVRASGVHSQTAHCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFPGTMLTSASFICQEILPSGVLSSEKYGTSDWWRPIKAEDGTSFRPLSSIPITNGHSQSRSLFPSYSEKQFPFLHDNGATSATGSIFCENNSQYPPGLGGSNSGSQSLFQDTSLGNEEFNVFDTESTVQGFSGISDSGCALSLLSSQSQNSSSQSSGIPVARPLVIPSSHSHYNMSHVSEKLIGISSQASSGVSDRFPSELNPADGSHLSPILISDNNEIVNFEMADGIFQGSDFVNVKNRLSCEDVPTIDLLQLSSQLQRVEHQRQSLQVKQENDSSCSLRIT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi65g00013 545 MobiDBLite consensus disorder prediction 1 21 - -
Sebi65g00013 545 SUPERFAMILY SBT domain 172 245 IPR036893 GO:0003677|GO:0005634
Sebi65g00013 545 Coils Coil 513 533 - -
Sebi65g00013 545 Gene3D - 164 228 IPR036893 GO:0003677|GO:0005634
Sebi65g00013 545 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 110 531 IPR044817 GO:0003677
Sebi65g00013 545 ProSiteProfiles Zinc finger SBP-type profile. 171 241 IPR004333 GO:0003677
Sebi65g00013 545 Pfam SBP domain 174 240 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi65g00013 Sebi-Chr65 553789 557462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi65g00013 125 322 SBP-box Gene Family AT1G69170 44.811 9.68e-43 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi65g00013 SBP 6.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi65g00013 - - gmx:100777766 885.174