Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi659g00025 ATGAGCCAAGAAGATGGACAAAAGAAAAAGAGAATCGCCATAATTGGCGTCTCTACATTTTTACTTGTGGGTATGGTAGTTGCCATTACAATTGGCGTTAACGTCAGTCAGGGTGATTCCAATGATTCAAAAAATACCGACAAGGCACGCATAGCTGCCACTGCAAAAGCAGTTAGAAGCTTTTGCAATCCAACGGATTATAGGAAAGAGTGCGAGGAAAGCCTCATGGAAACCACTCTCAACACAACAGACCCAAGAGAACTCATTAAAATCGCCTTCAACATAACCATTAGAAAAATCGGTTCTGGACTCAAGAAAACCGATATCTGGCATGAGGTTGAGAAGGATCCAAGGGCCAAAATGGCACTTGAAACGTGCAAACAACTCATGGATCTTTCAATTGAGGAATTCAAAAGGTCACTTGAGAGAATCGGCACGTTTGATCTCAACAACCTCGATAACATCCTCACGAATTTAAAGGTGTGGCTTAGCGGTGCAGTCACGTACCAAGATACTTGTTTAGATGGTTTTGAGAACACCACAAGTGACGTTGGTGTGAAAATGAAGAACTTATTAACAAGCACAATGCACATGACGAGCAATGCCCTTGCTATCATTATAGATCTGGAAACAGCATTTTTAGATATGAATCTATCAACAGAGAGGCGTAGCGCCATTGAGGAATATTCAGTGGAGGATGAATGTCATCATGATGATACAGATCAGCTTCCTTCTTGGGTTGATGATTGTCATGGTGTTGGTGTTCGTAGACTCCTTCATGACAATCCACACAAACTCAAGCCTAATTTGGTTGTAGCCAAAGATGGCAGTGGAAAATACAAGAGCATCAGTAAGGCATTGAAGAAAGTGCCTAAGAACAACAACAAACCATTCGTGATTTACATCAAGGAAGGCGTTTACCGTGAGTATCTTGAAATTACCAAGAAAATGACACACGTGGTTTTCGTCGGTGATGGTGGCAACAGGACACGAATCTCTGGCAACAAAAATTTCATAGATGGAATAAACACTTACAGAACCCCCACTGTTGCTGTTCAAGGAGATTACTTTGTGGCAATCAATATAGGGTTTGAGAATTCTGCTGGTCCTCACAAACATCAAGCAGTGGCCATAAGGGTTCAAGCAGACAAGTCCATATTTTACAAATGCACAATGGACGGGTATCAAGACACACTATATGCCCATGCCATGCGTCAATTCTATAGGGATTGCACAATTTCAGGCACAATTGATTTTATCTTTGGTGATGCAGTAGCTGTATTTCAGAATTGTACTTTCGTGATTAGAAAGCCGTTGGAAAATCAACAATGTATTGTAACTGCACAGGGAAGGAGGGAGAGGCATCAACCATCAGGAATTATCATTCAAGGGGGTTCCATTGTGTCTGATCACACAGTGAAGTTTGATAACAAGGCCTACTTAGCTCGTCCATGGAAGAATTTCTCTAGGACCATCTTTATGGATACTTATATTGATGGTTTGATTCAACCTGATGGATATATGCCATGGCAAGGACCACAGGGTCCTTCTGGTATGAACACATGTTTCTATGCAGAGTACAACAACACTGGACCTGGTTCTGATAAATCAAAACGTGTAAAATGGCGTGGGATCAAGACCCTCACATCACAATCCGCAACTAAATTCATACCAGCTAAATTCTTTCATGGAGATGACTGGATCAGGGTTACTAGGATACCTTACTCCTCTGGCTTGCCCCGCCACACAAGCACTAAATAA 1761 0.4179 MSQEDGQKKKRIAIIGVSTFLLVGMVVAITIGVNVSQGDSNDSKNTDKARIAATAKAVRSFCNPTDYRKECEESLMETTLNTTDPRELIKIAFNITIRKIGSGLKKTDIWHEVEKDPRAKMALETCKQLMDLSIEEFKRSLERIGTFDLNNLDNILTNLKVWLSGAVTYQDTCLDGFENTTSDVGVKMKNLLTSTMHMTSNALAIIIDLETAFLDMNLSTERRSAIEEYSVEDECHHDDTDQLPSWVDDCHGVGVRRLLHDNPHKLKPNLVVAKDGSGKYKSISKALKKVPKNNNKPFVIYIKEGVYREYLEITKKMTHVVFVGDGGNRTRISGNKNFIDGINTYRTPTVAVQGDYFVAINIGFENSAGPHKHQAVAIRVQADKSIFYKCTMDGYQDTLYAHAMRQFYRDCTISGTIDFIFGDAVAVFQNCTFVIRKPLENQQCIVTAQGRRERHQPSGIIIQGGSIVSDHTVKFDNKAYLARPWKNFSRTIFMDTYIDGLIQPDGYMPWQGPQGPSGMNTCFYAEYNNTGPGSDKSKRVKWRGIKTLTSQSATKFIPAKFFHGDDWIRVTRIPYSSGLPRHTSTK 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi659g00025 586 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Sebi659g00025 586 FunFam Pectinesterase 54 210 - -
Sebi659g00025 586 SMART PMEI_2 53 205 IPR006501 GO:0004857
Sebi659g00025 586 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Sebi659g00025 586 FunFam Pectinesterase 263 579 - -
Sebi659g00025 586 CDD PMEI-like_3 60 206 - -
Sebi659g00025 586 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Sebi659g00025 586 SUPERFAMILY Pectin lyase-like 267 578 IPR011050 -
Sebi659g00025 586 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 206 IPR035513 -
Sebi659g00025 586 NCBIfam pectinesterase inhibitor domain 52 207 IPR006501 GO:0004857
Sebi659g00025 586 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Sebi659g00025 586 Pfam Pectinesterase 269 565 IPR000070 GO:0030599|GO:0042545
Sebi659g00025 586 PANTHER PECTINESTERASE 21 569 - -
Sebi659g00025 586 Gene3D - 263 579 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi659g00025 Sebi-Chr659 383458 385489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi659g00025 4 579 Carbohydrate Esterase AT3G05610 48.542 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi659g00025 K01051 - gmx:100794799 855.129