Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi659g00024 ATGTCTGGGGGAGATGCAGAGAGGGGAAAGAGCATCGTCATCATTGGCCTATCTTCCTTGTTACTAGTGGCCATGATCGTTGCCGTCACTATTGGTCTTAACGAAAATGAGAATAGTTCCGATGGTGATAATTTAGAGGACAACAGGAAGCACCACATCGTTTCAACCGTATCAGCAATTCAAACCCTTTGCCATCCCACCGATTACAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCGACACCACAGACCCAAAAGAATTGATCAAAATCGCCTTTAACGTTACCATTAAGAAAATTGGTGACAAACTCAAGGAAACAGAGCTCTTGCAAGAGGTTGAGAAGGAACCAAGAGCCAAGATGGCACTTGACACGTGCAAGCAACTGATGGATCTTTCAATTGAGGAATTCAAGAGGTCACTTGATGAAATAGGTCAATTTGATCTCACAAATCTTGACAAGATTCTCATGAATTTAAAGGTTTGGCTAAGCGGTGCAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCGAAGCAAGTGCAAAGATGAAGGACCTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCTGATTTTGCTGACACTGTCTCAGATTGGAATGTCACAAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGAAGACTCCTTCTTGGGTTGATGAACAAACTCTCCTTGATACAAACACAAATGGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGGACAATGAAGAGCCATTTGTCATATACATCAAGGAAGGCATTTACCAAGAGTATGTTGAAGTTACCAAGCAAATGACCTATGTGGTGTTTGTTGGTGATGGTGGCCAAAAGACAAGAATCACTGGCAACAAAAACTTCATAGATGGGATTAACACCTACAGAACCGCTACAGTTGCAATTCAAGGAGATCATTTTGTTGCTAGGAATATGGGTTTTGAGAACTCAGCTGGGCCCCACAAGCATCAAGCAGTGGCATTGAGGGTTCAAGGAGACAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTACAGAGATTGCACTATTTCAGGTACCATTGACTTCGTCTTTGGTAATGCGCTGTCTGTTTTCCAGAACTGCACTTTTGTGGTTCGGAAGCCATTGAAAAATCAACAATGCATTGTGACGGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTCTATGCAGTGAGGTTTGAGAATAAGGCGTACCTTGCTCGTCCGTGGAAGAATTTCTCAAGGACCGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGATATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCCGAGTACCATAACACTGGTCCCGGTTCTAATAAATCCAAGCGTGTCAATTGGGCTGGGATATGGAACCTCAATTCAAAAGCTGCAAACTCTTTCTCACCATCCAAGTTCTTTCATGGGGATGACTGGATTGAGGTTACTGGGATTCCTTACTTTCCTGGTGTTCCCACTCACCATAGGCACAAAAAGACAATACTTAGTTGGTGA 1713 0.4349 MSGGDAERGKSIVIIGLSSLLLVAMIVAVTIGLNENENSSDGDNLEDNRKHHIVSTVSAIQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKETELLQEVEKEPRAKMALDTCKQLMDLSIEEFKRSLDEIGQFDLTNLDKILMNLKVWLSGAVTYQDTCLDGFENTTSEASAKMKDLLTTGMHMSSNALAIVSDFADTVSDWNVTKLFGRRLLQDSEKTPSWVDEQTLLDTNTNGSGDFKSINEALKHVPEDNEEPFVIYIKEGIYQEYVEVTKQMTYVVFVGDGGQKTRITGNKNFIDGINTYRTATVAIQGDHFVARNMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSVFQNCTFVVRKPLKNQQCIVTAQGRKERQQPSGIVIQGGSIVSDPLFYAVRFENKAYLARPWKNFSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSNKSKRVNWAGIWNLNSKAANSFSPSKFFHGDDWIEVTGIPYFPGVPTHHRHKKTILSW 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi659g00024 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Sebi659g00024 570 Gene3D - 247 558 IPR012334 -
Sebi659g00024 570 SMART PMEI_2 55 207 IPR006501 GO:0004857
Sebi659g00024 570 CDD PMEI-like_3 62 212 - -
Sebi659g00024 570 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Sebi659g00024 570 FunFam Pectinesterase 241 557 - -
Sebi659g00024 570 Pfam Pectinesterase 249 543 IPR000070 GO:0030599|GO:0042545
Sebi659g00024 570 SUPERFAMILY Pectin lyase-like 248 556 IPR011050 -
Sebi659g00024 570 NCBIfam pectinesterase inhibitor domain 56 208 IPR006501 GO:0004857
Sebi659g00024 570 FunFam Pectinesterase 56 212 - -
Sebi659g00024 570 Pfam Plant invertase/pectin methylesterase inhibitor 59 207 IPR006501 GO:0004857
Sebi659g00024 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 211 IPR035513 -
Sebi659g00024 570 PANTHER PECTINESTERASE 18 547 - -
Sebi659g00024 570 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi659g00024 Sebi-Chr659 380589 382422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi659g00024 5 557 Carbohydrate Esterase AT3G05610 48.592 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi659g00024 K01051 - gmx:100803527 962.985