Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi659g00022 ATGTCTGGGGGAGATGCACAGAAGGGAAAGAACATTGCAATCATTGGTGTATCTGCCTTATTACTAGTGGCTATGGTTGTGGCCGTCACAGTTAGTTACAATAAAAACGGTTCGGAAAATGATATAGAGGACAACAGGAAGCACCATGTGGCTTCCACAATCAAAGCAGTCCAAACCCTTTGCCATCCCACGGATTATAAGAAGGAATGTGAGGAAAGCCTCATAGCAGAGGCTGGCGACACCACTGACCCAAAAGAATTGATCAAAATTGCCTTTAACGTTACCATTAAGAAAATCGGTGACAAACTCAAGGAAACAGAGCTCTTGCACGAGGTTGAGAAGGAACCTAGAGCCAAGATGGCACTTGACACGTGTAAGCAACTCATGGATCTTTCAATTGAGGAACTCAAGAGGTCACTTGATGAAATAGGTGAGTTTGATCTCACAAATCTTGACAAGATCCTCATGAATTTAAAGGTTTGGCTAAGCGGTGCAGTGACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACGAGCGAAGCAAGTGCAAAGATGAAGGACCTATTAACAACAGGCATGCACATGAGTAGCAATGCCCTTGCCATTGTTTCTGATTTTGCTGACACTGTCTCAGATTGGAATGTCACAAAGTTATTTGGGCGTCGCCTCCTTCAAGATTCTGAGAAGACTCCTTCTTGGGTTGATGAACGAACTCTCCTTGATACAAACACAAGTACATTCCAGCATAAGCCTAATTTGACTGTGGCCATAGATGGTAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGCATGTGCCTGAGGACAATGAAGAGCCATTTGTCATATACATCAAGGAAGGCATTTACCAAGAGTATGTTGAAGTTACCAAGCAAATGACCTATGTGGTGTTTGTTGGTGATGGTGGCCAAAAGACAAGAATCACTGGCAACAAAAACTTCATAGATGGGATTAACACCTACAGAACCGCTACAGTTGCAATTCAAGGAGATCATTTTGTTGCTATGAATATGGGTTTTGAGAACTCAGCTGGGCCCCACAAGCATCAAGCAGTGGCATTGAGGGTTCAAGGAGACAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAGGACACACTTTATGTACACACCATGCGTCAATTCTATAGAGATTGCACTATTTCAGGTACCATTGACTTCGTCTTTGGTAATGCGCTGTCTGTTTTCCAGAACTGCACTTTTGTGGTTCGGAAGCCATTGAAAAATCAGCAATGCATTGTGACGGCACAAGGAAGGAAAGAAAGGCAACAACCATCAGGAATAGTGATCCAAGGAGGATCCATTGTGTCTGATCCTCTGTTTTACGCAGTGAGGTTTGAGAATAAGGCGTACCTTGCTCGTCCGTGGAAGAATTTCTCAAGGACCGTCTTCATGGATACATACATTGACGATTTGATTCATCCTGATGGATATTTGCCATGGCAAGGAGAAGAGGGTCCTTCTGGTATGAACACTTGCTTTTATGCTGAGTACCATAACACTGGTCCCGGTTCTGATAAATCCAAGCGTGTCAATTGGGCTGGGATATGGAACCTCAATTCAAAAGCTGCAAACTGGTTCTCACCATCCAAGTTCTTTCATGGGGATGACTGGATTGAGGTTACTGGGATTCCTTACTTTGCTGGTGTTCCCACCCACCACAGGCACAAAAAGACAATACTTAATTGGTGA 1743 0.436 MSGGDAQKGKNIAIIGVSALLLVAMVVAVTVSYNKNGSENDIEDNRKHHVASTIKAVQTLCHPTDYKKECEESLIAEAGDTTDPKELIKIAFNVTIKKIGDKLKETELLHEVEKEPRAKMALDTCKQLMDLSIEELKRSLDEIGEFDLTNLDKILMNLKVWLSGAVTYQDTCLDGFENTTSEASAKMKDLLTTGMHMSSNALAIVSDFADTVSDWNVTKLFGRRLLQDSEKTPSWVDERTLLDTNTSTFQHKPNLTVAIDGSGDFKSINEALKHVPEDNEEPFVIYIKEGIYQEYVEVTKQMTYVVFVGDGGQKTRITGNKNFIDGINTYRTATVAIQGDHFVAMNMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQFYRDCTISGTIDFVFGNALSVFQNCTFVVRKPLKNQQCIVTAQGRKERQQPSGIVIQGGSIVSDPLFYAVRFENKAYLARPWKNFSRTVFMDTYIDDLIHPDGYLPWQGEEGPSGMNTCFYAEYHNTGPGSDKSKRVNWAGIWNLNSKAANWFSPSKFFHGDDWIEVTGIPYFAGVPTHHRHKKTILNW 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi659g00022 580 Gene3D - 248 567 IPR012334 -
Sebi659g00022 580 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Sebi659g00022 580 SUPERFAMILY Pectin lyase-like 249 566 IPR011050 -
Sebi659g00022 580 CDD PMEI-like_3 59 209 - -
Sebi659g00022 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 208 IPR035513 -
Sebi659g00022 580 Pfam Pectinesterase 254 553 IPR000070 GO:0030599|GO:0042545
Sebi659g00022 580 FunFam Pectinesterase 248 567 - -
Sebi659g00022 580 NCBIfam pectinesterase inhibitor domain 51 205 IPR006501 GO:0004857
Sebi659g00022 580 SMART PMEI_2 52 204 IPR006501 GO:0004857
Sebi659g00022 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 208 IPR035513 -
Sebi659g00022 580 ProSitePatterns Pectinesterase signature 1. 279 298 IPR018040 -
Sebi659g00022 580 PANTHER PECTINESTERASE 15 557 - -
Sebi659g00022 580 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Sebi659g00022 580 FunFam Pectinesterase 53 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi659g00022 Sebi-Chr659 367276 369100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi659g00022 5 567 Carbohydrate Esterase AT3G05610 49.912 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi659g00022 K01051 - gmx:100803527 1009.98