Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi658g00031 ATGGAGGATAAGAAGAAGACGATGCTTCCATCACCATCACACACTAAAGTTAGGGGCTTTCAAAGCCTTGTTGGACCTGCCACCAATGCAGCTGCTTCTTCGTCTTTCACTGCTTCCGGAAAGCTCTATTCTCCCAATGACTCGGAGAGTTTCTACTCCAAACTCACTGAGTTGTTGGACTCCTCTGGACTCAGTCTAATTTTCAATGTCCGAGAAACATTGTTGGACTTGCACTTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATCACCAGGTTGGCCGAGAAAAGAAATGGGTTGAAGTGGTCTCTGCCCTAAAATTGGAAGGCAATAATGCAAAGTTATCTGCTCAAGTTGAAAAGCTCTATGCACACCTTCTTTATGAATTTGAGAAATTGTACTTCTACAGGTGTCCTCAAAAGCAACCTGCAGCTAGCACCAGCAAAGAACAACCAGTGATTCTTCCTCAAGTGACAAAGAAACCAAGAAACCAAGAAACAAAGAAACGGCCAGGTGCTCCAGGAGGAAGGAATGCATATCATATATTCCTCAAGCAGGAATGTGCTCGATTGAGAACTTGTAATAAGGCCTCAAATGGCCCAAAAACCCTAAGAATGGCTGTTGATGCATGGAAGAAGATGTCTGAGATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAAAATTTAAGAAAGCAATGATTACTAGCAATAAACAGCAGAGCATGGAAAAGAAGGGGCCAAGTGTGTGTGGTGGTGACTACTATGTAACTTCACAACCTGAGGCAGATAATTCCCTTGTGAATAAAGCAGCAGTCAACTTAGCTCTTAAAATGACTGAAAAGGATCCTTTACTCCTGATGGACTGGGATGCTTGTTGTTCACTAGATTTTCCAACTGGGGAACAAGACTTTTGCCAGAAACTGGATAACATTGAGAAGATGAGCACCACAGCCACAAATTTTCCCTCTGGTCTCAAACCAGGGGAGCTCTCAAGAGAGCTCGCTCCCACATCAAAACTCACACAGAAAACAGTCCTAGACATCCTGAACAACAAATGTTTTAATTCCCTCCAACATCTGAGGCAGGCTCATGCTATCATATTGAAAACTGGTCATTTTCAAGACCATTATGTATCTGGCACCTTAGTCAAGGAGCTTAGAGAATGGGAGCCTGATAAGGCTATATCATGTTACCATAAGATGGTGCTCTTGAATTCTAGGCCTAATAAGTTCACTTATCCTACTTTACTCAAGGCTTGTGCCATTACAGGTTCTGTGAAAGAAGGGGTTCAGTTTCATGCACTTGTAGTGAAAAACGGGCTTTAG 1338 0.4283 MEDKKKTMLPSPSHTKVRGFQSLVGPATNAAASSSFTASGKLYSPNDSESFYSKLTELLDSSGLSLIFNVRETLLDLHLFYLEVTRRGGYHQVGREKKWVEVVSALKLEGNNAKLSAQVEKLYAHLLYEFEKLYFYRCPQKQPAASTSKEQPVILPQVTKKPRNQETKKRPGAPGGRNAYHIFLKQECARLRTCNKASNGPKTLRMAVDAWKKMSEIEKQPYVEESKKNKEKFKKAMITSNKQQSMEKKGPSVCGGDYYVTSQPEADNSLVNKAAVNLALKMTEKDPLLLMDWDACCSLDFPTGEQDFCQKLDNIEKMSTTATNFPSGLKPGELSRELAPTSKLTQKTVLDILNNKCFNSLQHLRQAHAIILKTGHFQDHYVSGTLVKELREWEPDKAISCYHKMVLLNSRPNKFTYPTLLKACAITGSVKEGVQFHALVVKNGL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi658g00031 445 Gene3D High mobility group box domain 163 253 IPR036910 -
Sebi658g00031 445 SUPERFAMILY ARID-like 42 139 IPR036431 GO:0003677
Sebi658g00031 445 ProSiteProfiles ARID domain profile. 45 135 IPR001606 GO:0003677
Sebi658g00031 445 MobiDBLite consensus disorder prediction 146 177 - -
Sebi658g00031 445 SMART bright_3 46 136 IPR001606 GO:0003677
Sebi658g00031 445 SMART ARID_2 42 131 - -
Sebi658g00031 445 CDD HMG-box_SF 177 223 - -
Sebi658g00031 445 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 173 241 IPR009071 -
Sebi658g00031 445 Pfam HMG-box domain 176 240 IPR009071 -
Sebi658g00031 445 SUPERFAMILY HMG-box 156 237 IPR036910 -
Sebi658g00031 445 Gene3D Tetratricopeptide repeat domain 341 445 IPR011990 GO:0005515
Sebi658g00031 445 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 142 268 - -
Sebi658g00031 445 MobiDBLite consensus disorder prediction 146 161 - -
Sebi658g00031 445 Gene3D - 28 152 IPR036431 GO:0003677
Sebi658g00031 445 Pfam ARID/BRIGHT DNA binding domain 48 131 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi658g00031 Sebi-Chr658 332096 335801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi658g00031 75 154 ARID Transcription Factor Family AT1G76110 39.773 7.44e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sebi658g00031 ARID 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi658g00031 - - var:108325455 285.419