Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi658g00029 ATGGTGTGTCCTGATGGTGAAAAGGACCCTCTTGTCCTTGCATATATTGGCATGCTATTGGGTGCGGAGAAGGCATCAAGAGGAGATACTATTTCTTCAGGACAGTATGGTTTCTCAGGAAATAATGATCCTTTCAGTCGTGTGCGTAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGATCTGGTAGCTCTCTCCCTCTGTTTTGGTATTGGGGTGACAGGGTGGGGGGAAGTTGATCTGTTAGGAGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATCGACTGCTATTCGAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTTAGAAGGCAAGCTTACATTTTTTGTGATATGTTTCTTTCCTCACCTATTTGTGTCACTAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCTAGAAAAGAACTTGGGAAAATTAAAGAATCCATGGAAGATGCGGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGGAATTCTTCAGAAAGCATCTGGAGCACTAAGAAGCAGTGTCCAGGGAGCTCAAAAATTGGGAAAGTCAGAGACAAAAGTTAATGGAGGCAGAATCCACTCCATTTCACATGATACTCAAACGTCAGGGCCATCTGAAGTTCATCATCACAATAAGGGTAATGAGCGGCAAATTCCTGCTAAAGAATCATTCTTAATGGAGGAGACTTTTAACAGGGATACAAAAGCCAGAAGCAGGACTCAAGGACAAGAAGGGGATGGTTCTAAGCAAGTTTCTAGTTCAAGCAACAGTTTGGAGCAGAGAAATCACAGTACTAGAAAGCTAGAAATGAAAACATCAATTCAACAGCTTGCTTCTCGTGCAGCTTCTCGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACTACCGCTTATCAATTTGAGGCCTCTTGGAGAGGGTTTTCAGGTGATCTTGCTTTGCAGACTCGTCTATTAAAGGCCATATCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCATCTACCCTGCTAATTGAGATCATCAAGTGTGTTGCATCCTTTTTCACTGAAGAGATGGATCTGGCTATCAGTTATATGGAGAATTTGATCAAGGTACCGAGATTTGATATGATCATAATGTGCCTTCCATCAGCAGATAAGGATGACTTACACAAGATCTGGGATGAAGTGTTCTGTAGTGAGGCAACTCCGATGGAGTATGCAGAGATTCTGGACAACCTCCGATCAAAATTCGGTGTTGGACAATGA 1425 0.4218 MVCPDGEKDPLVLAYIGMLLGAEKASRGDTISSGQYGFSGNNDPFSRVRSSFVPEDVPDAASEKDLVALSLCFGIGVTGWGEVDLLGGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLRRQAYIFCDMFLSSPICVTRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKGILQKASGALRSSVQGAQKLGKSETKVNGGRIHSISHDTQTSGPSEVHHHNKGNERQIPAKESFLMEETFNRDTKARSRTQGQEGDGSKQVSSSSNSLEQRNHSTRKLEMKTSIQQLASRAASRAMAEAAKNITPPTTAYQFEASWRGFSGDLALQTRLLKAISPHELPKIFKNALSSTLLIEIIKCVASFFTEEMDLAISYMENLIKVPRFDMIIMCLPSADKDDLHKIWDEVFCSEATPMEYAEILDNLRSKFGVGQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi658g00029 474 ProSiteProfiles TPR repeat profile. 166 199 IPR019734 GO:0005515
Sebi658g00029 474 Gene3D Tetratricopeptide repeat domain 86 243 IPR011990 GO:0005515
Sebi658g00029 474 MobiDBLite consensus disorder prediction 298 316 - -
Sebi658g00029 474 PANTHER OS05G0129900 PROTEIN 88 472 - -
Sebi658g00029 474 MobiDBLite consensus disorder prediction 258 272 - -
Sebi658g00029 474 MobiDBLite consensus disorder prediction 281 297 - -
Sebi658g00029 474 MobiDBLite consensus disorder prediction 228 326 - -
Sebi658g00029 474 Pfam Potential Monad-binding region of RPAP3 350 439 IPR025986 -
Sebi658g00029 474 ProSiteProfiles TPR repeat profile. 81 114 IPR019734 GO:0005515
Sebi658g00029 474 SUPERFAMILY TPR-like 88 213 IPR011990 GO:0005515
Sebi658g00029 474 SMART tpr_5 166 199 IPR019734 GO:0005515
Sebi658g00029 474 SMART tpr_5 81 114 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi658g00029 Sebi-Chr658 291390 296181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi658g00029 88 169 U-box Gene Family AT3G07370 32.530 7.42e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi658g00029 K23002 - gmx:100784528 623.624