Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi658g00027 ATGGAAGATACTATTTACAGGTTGAACTTGAACCCACCTCTACTAGAGGATCTTGTTATTAGAGATAGAGATAGAGATAGCAACGTTAACGTGTCTGCTTCTTCTGAATCGCATCCGGGTAATAATAACTACCTTCACTTTCACGAACCCGGGTCAGATCGGATGCTCAAGAACCAGATCGCCTCTCACCCTATTTATCCAAATCTACTATCTGCTTATATAGAATGCCAAAAGGTTGGAGCACCGTCAGAATTGGTATCCCTTCTTGAAGAAATAGCCCGTGAAAATCACCCCACGGACACCATTACTCTTCGTCAGAATATTGGAGATGATCCTGAGCTTGATGACTTCATGGAATCATACTGTGAAATTCTTCATAGATATAAAGAGGAGTTGTCAAAGCCCTTCAATGAAGCCACCTTGTTTTTGTGTAATATTCAATCACAACTCACCGACCTTTGTAAGGGTAAGGGTAAGGGGACACTACTAACAATCTCATCATCGGATATTCATAACAACCACCGCTCAGATCATGAGGTAGGTGGGACTTCAGAGGATGAATTGAGTTGTGGGAAAGGGGAAGCAGTTGAAGGTCATGAATCTTGTGGTACAGGTGATCAAGAGCTGAAAGAAATGCTCCTTCGGAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAGGGTAAGCTACCTAAGGATGCAAGGAAAACACTCATGGACTGGTGGAACACCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAATTGCAGCTATCAGAAATGACTGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCATCTGAATCTGCCATTATGGAAGGTGTAAGTGGCAGCGGCATAGGAGGACCCCTGTAA 930 0.428 MEDTIYRLNLNPPLLEDLVIRDRDRDSNVNVSASSESHPGNNNYLHFHEPGSDRMLKNQIASHPIYPNLLSAYIECQKVGAPSELVSLLEEIARENHPTDTITLRQNIGDDPELDDFMESYCEILHRYKEELSKPFNEATLFLCNIQSQLTDLCKGKGKGTLLTISSSDIHNNHRSDHEVGGTSEDELSCGKGEAVEGHESCGTGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARKTLMDWWNTHYRWPYPTEEEKLQLSEMTGLDQKQINNWFINQRKRHWKPSESAIMEGVSGSGIGGPL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi658g00027 309 SMART ELK_2 208 229 IPR005539 GO:0003677
Sebi658g00027 309 Pfam ELK domain 208 229 IPR005539 GO:0003677
Sebi658g00027 309 SMART HOX_1 230 295 IPR001356 GO:0003677
Sebi658g00027 309 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Sebi658g00027 309 Pfam KNOX2 domain 108 154 IPR005541 GO:0003677|GO:0005634
Sebi658g00027 309 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Sebi658g00027 309 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Sebi658g00027 309 CDD homeodomain 240 292 IPR001356 GO:0003677
Sebi658g00027 309 SUPERFAMILY Homeodomain-like 230 300 IPR009057 -
Sebi658g00027 309 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
Sebi658g00027 309 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 293 - -
Sebi658g00027 309 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Sebi658g00027 309 Gene3D - 226 299 - -
Sebi658g00027 309 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Sebi658g00027 309 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi658g00027 Sebi-Chr658 271733 274183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi658g00027 55 303 Homeobox Transcription Factor Family AT1G23380 52.529 1.55e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi658g00027 KNOX2 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi658g00027 - - mtr:11406488 379.793