Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi658g00006 ATGTCGTTACGTCCAACCACCAACTCGAAGACCGATAACCGCCGGCATCGATACAAGGTGGCGGTGGATGCGGAAGAAGGCCGCCGCCGCCGAGAGGACAGCATGGTGGAGATCCGCAAGAACCGTAGAGAAGAGAGTTTGCTGAAAAAGAGGCGCGAGGGTCTCCAACCTCAGCAGATGCCTCCCACTGTTCACTCTACTGTGATAGAGAAGAAGTTGGAACACCTACCAGCTATGGTTGCAGAACGTAGTCCACCAATTGAGGAGGTTATACAGTCTGGTGTTGTTTCTCGTTTTGTGGAGTTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCCTCGGGAACATCTGAAAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCAATTTTTGTAAAGCTCCTTGCTTCTCCTAGCGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGTAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCCGTCTTATCCATTCAAACGATGAAGAGGTCTTGACCGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATCCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTCCTAATGCACCAATCTCCTTCAGTGCTAATTCCTGCTCTTCGTACTGTTGGAAATATTGTCACCGGAGATGATATGCAAACTCAGGTTATCATCAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATATAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTTGATATTAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACGTCTGGTGGATCTCATGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTAGGAGAAGCTGATAAAAATATAGGCAATACTGGTGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAATGCAGAGATTTATGAAAAGGCAGTGAAAATTCTTGAGACATACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGACGCTTCTCAACCAGGATTCAACTTTGGAAGCACTGGGGTTCCTGCGGTGCCTTCTGGTGGATTCAACTTTAATTAG 1530 0.4549 MSLRPTTNSKTDNRRHRYKVAVDAEEGRRRREDSMVEIRKNRREESLLKKRREGLQPQQMPPTVHSTVIEKKLEHLPAMVAERSPPIEEVIQSGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHQSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNAEIYEKAVKILETYWLEEEDETMPPGDASQPGFNFGSTGVPAVPSGGFNFN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi658g00006 509 FunFam Importin subunit alpha 63 474 - -
Sebi658g00006 509 SUPERFAMILY ARM repeat 13 478 IPR016024 -
Sebi658g00006 509 MobiDBLite consensus disorder prediction 1 64 - -
Sebi658g00006 509 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 94 137 IPR000225 GO:0005515
Sebi658g00006 509 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Sebi658g00006 509 PANTHER IMPORTIN ALPHA 13 479 - -
Sebi658g00006 509 MobiDBLite consensus disorder prediction 9 52 - -
Sebi658g00006 509 FunFam Importin subunit alpha 13 52 - -
Sebi658g00006 509 Pfam Atypical Arm repeat 435 481 IPR032413 -
Sebi658g00006 509 Pfam Importin beta binding domain 14 81 IPR002652 GO:0006606|GO:0061608
Sebi658g00006 509 Gene3D - 66 474 IPR011989 -
Sebi658g00006 509 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 179 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 337 377 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 126 166 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 380 420 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 211 250 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 167 209 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 83 124 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 252 292 IPR000225 GO:0005515
Sebi658g00006 509 SMART arm_5 294 335 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 381 418 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 222 249 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 168 209 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 337 376 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 295 335 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 84 124 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 253 291 IPR000225 GO:0005515
Sebi658g00006 509 Pfam Armadillo/beta-catenin-like repeat 126 165 IPR000225 GO:0005515
Sebi658g00006 509 PIRSF Importin_alpha 5 81 IPR024931 GO:0005737|GO:0006606|GO:0061608
Sebi658g00006 509 PIRSF Importin_alpha 71 508 IPR024931 GO:0005737|GO:0006606|GO:0061608
Sebi658g00006 509 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 221 263 IPR000225 GO:0005515
Sebi658g00006 509 Gene3D - 13 52 IPR036975 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi658g00006 Sebi-Chr658 36283 57656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi658g00006 216 442 U-box Gene Family AT2G23140 23.684 4.84e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi658g00006 K15042 - gmx:100789135 943.34