Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi658g00004 ATGGCGACGAGGAATCGCACTTTGCTTTTCCGAAAACACAGAGATGCATTGAAGAGTGTTCGCGTTCCGTCCTCCTCTTCGCCGTCGTCCACCGCTTCCGCCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAACCCCAATCGCTCTTACGCTCCGCTTAGTACTGAAGATCCCGGTAATTCGAGTAAGGGTCCAAATCCAATTACTGTGGGGTTACCTCCAGCGTGGGTTGATTTATCTGAAGAAATATCAGCAGATGTGCAACGTGCGCGCACAAAAATGGCAGAGTTGGCTAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAAGACCAACGTGCTATTGAGACTCTAACACACGAGGTAACTGACTTAATCAAGAGATCAGAGAGGAGACTGCGGAGACTTTCTGCTGCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTCCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCTGCAAAAAGAGGGTCAAGACGGGGTTGATCTAGAAATCAACTTAAATGGAAGTAAATCTAGATATGAAGATGATGACTTGGATAATATGGTATTTAATGAGCATCAGATGGCCAAACTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAGGTTGTGGAATCCGTCAATGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGATCAGGGAACCATAGTTGATAGAATAGACTACAACATTCAGAAAGTTGCAACCACAGTTGAGGATGGCCTTAAACAGTTGCAGAAGGTCCTTCTTCTCTTCCTTGCCTTCTATTTTAGTTAG 906 0.4503 MATRNRTLLFRKHRDALKSVRVPSSSSPSSTASAGGPVIELVSTSLLNPNRSYAPLSTEDPGNSSKGPNPITVGLPPAWVDLSEEISADVQRARTKMAELAKAHAKALMPSFGDGKEDQRAIETLTHEVTDLIKRSERRLRRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEGQDGVDLEINLNGSKSRYEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQKVATTVEDGLKQLQKVLLLFLAFYFS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi658g00004 301 Coils Coil 83 103 - -
Sebi658g00004 301 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Sebi658g00004 301 Gene3D - 76 283 - -
Sebi658g00004 301 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Sebi658g00004 301 PANTHER SYNTAXIN 83 290 IPR045242 -
Sebi658g00004 301 CDD SNARE_syntaxin16 234 284 - -
Sebi658g00004 301 SMART SynN_4 70 185 IPR006011 GO:0016020
Sebi658g00004 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Sebi658g00004 301 SMART tSNARE_6 224 291 IPR000727 -
Sebi658g00004 301 FunFam Syntaxin-43 76 283 - -
Sebi658g00004 301 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi658g00004 Sebi-Chr658 23735 27151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi658g00004 1 290 SNARE and Associated Proteins AT3G05710 78.333 3.38e-167 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi658g00004 K08489 - gmx:100796741 490.345