Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi658g00002 ATGGTAAGGGGAGGAAAGTTTAGTGGCAAAAGCAATTTCAGGAAAAAAGGTCGGTCAAAGGAGGGAAGTTCTGATGATTCTGATGAGGACTATGTGGTCTCAGATGAAGGTAGAGACGTCTCTGACTATTATTGCTCCTCGTTGGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATTGAGGATGAGGAATTTCAAGGAGTGAGGAATTCTAATAGATCCAAGGCAAAAAATCGCATTCGTGGTGGTCGGAAGAAAAATGCAAAAGATGATGAATTTCCAGAAGATGATGAATTTACAGCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAGTGGGAGGCAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTGTTGAAGAAAAAGGCCTCTGTGGTTTCTACCAGGGGTCGAAAAAGGCGAAGTTCTAGAGCATCAAAGAAGCCCATGAGAACCAAACCAAGAAAGAATGGGAGGTTAAGGAGGAAAGTAAAATGTGACAATGAAGGTGATTTTATAGATAATGGCCCAGCCATCAGGACAAGTAGGAAAAAACAGGCCCGAAAGAGGAGAAGGATGATTCTTTCAGATTCAGATTGTGTGTCTTTGGGATCAACTGATTTTGAGTATACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAGCTTGAGAAATAACTTGAGGAGTTCATCCCTTCAAATAAACAATGAAGAGGCTGGAGTCCAAGAAGATCTAAATCTGCAACACAAGCCCCCAGGTCGGAAGGGTAAGGAGAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGAACTTAAAAAGTGAGGTGGGAAAGCAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACAACAGGAATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGAGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCCTATGAGTATGTTATTTGTTCAGAGTGTCATCTAGGTGGAGATGATGGCCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGCTGAACCAAGGGTGACAATCCAGAGCCTGCCTGCTAGACCATCCCCTCTTCTACATGTACGAGAAAGTATAGACCTCAACTTGATCTCTTCACCCCGTGCAGTTTCCAATCAAGGATTTGTGCATCTTTCATCTTCTAGATTTATTGGGAGAAGTGTCGATGGAGCTTCTCCAGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACAACGTCAAATTCATCAGCTACGTTCAGTAGATAGGATGGCTACTACAACTGGCAGAACTAATGGCATTTCAGCTATCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAATGTAGGGAAACAGCCCCTCAAAATGCAAGGACACAGGATGTGGGAACATCATACCACACATTCTTTGAAGAGAGATTATACAACAATATTTCTCCATTAATGCAGAATGGGACATCATGGCCTGGACATGTGGGTCCACCTTCAGTACCTGATTGTGAACAAGTCCATCAGTTCAGCAGATCAAACATGGTCACTGATGGTAGCTCATCCCCTGCCGTAATAGAAGACTTTCACATTGTGAAGGAGCAGGTGCACTCAATGGTTAAAAGCCACCTAAAGAGCCTGTCCCAAAATATTGATTTAAGCCACAGTACTCTCAAGGACATTGCAAGGAGTTGTATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACATGAAGAATGAGGTTCGCACTGTGCCTCCCCCATCCGTCTGTCCGCACATTGAACTGACGGCTGGTGCGCAATCGAGTCTGATTAATGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATTTTGGATACAAGAATGCCCTCCCAGTGGTTACGATTAGGTCTTTAG 2136 0.4349 MVRGGKFSGKSNFRKKGRSKEGSSDDSDEDYVVSDEGRDVSDYYCSSLDGCASEESFDSFIEDEEFQGVRNSNRSKAKNRIRGGRKKNAKDDEFPEDDEFTAEEEDYSDEEEEMSGRQKKNNGMKMGKKVLKKKASVVSTRGRKRRSSRASKKPMRTKPRKNGRLRRKVKCDNEGDFIDNGPAIRTSRKKQARKRRRMILSDSDCVSLGSTDFEYTISEEEREQVREAKKLCGSLRNNLRSSSLQINNEEAGVQEDLNLQHKPPGRKGKEKIEEPQGRKGKEKVENLKSEVGKQWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEAEPRVTIQSLPARPSPLLHVRESIDLNLISSPRAVSNQGFVHLSSSRFIGRSVDGASPVSGGAPTLSERRWIQRQIHQLRSVDRMATTTGRTNGISAISSTSNLYSSQIDQCRETAPQNARTQDVGTSYHTFFEERLYNNISPLMQNGTSWPGHVGPPSVPDCEQVHQFSRSNMVTDGSSSPAVIEDFHIVKEQVHSMVKSHLKSLSQNIDLSHSTLKDIARSCMHTILAACGLEHMKNEVRTVPPPSVCPHIELTAGAQSSLINGCCSSCFDSFVGDVVKRILDTRMPSQWLRLGL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi658g00002 711 SMART PHD_3 356 401 IPR001965 -
Sebi658g00002 711 Coils Coil 218 238 - -
Sebi658g00002 711 MobiDBLite consensus disorder prediction 246 282 - -
Sebi658g00002 711 MobiDBLite consensus disorder prediction 122 166 - -
Sebi658g00002 711 ProSiteProfiles Zinc finger PHD-type profile. 354 403 IPR019787 -
Sebi658g00002 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 406 IPR013083 -
Sebi658g00002 711 MobiDBLite consensus disorder prediction 95 111 - -
Sebi658g00002 711 Pfam PHD-finger 356 402 IPR019787 -
Sebi658g00002 711 MobiDBLite consensus disorder prediction 1 36 - -
Sebi658g00002 711 PANTHER F18C1.6 PROTEIN 294 700 - -
Sebi658g00002 711 MobiDBLite consensus disorder prediction 63 197 - -
Sebi658g00002 711 SUPERFAMILY FYVE/PHD zinc finger 326 402 IPR011011 -
Sebi658g00002 711 MobiDBLite consensus disorder prediction 260 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi658g00002 Sebi-Chr658 15703 18858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi658g00002 351 400 C2H2 Transcription Factor Family AT3G01460 46.154 7.41e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi658g00002 PHD 1.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi658g00002 - - gmx:100797448 909.827