Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi656g00013 ATGATGAAGAGATGCAGAGTCGATGATGAGGGTGAGGTAGATGAAATGGCTAATTGTTTGATGTTACTGTCCAAAATTGGTGACCCATCCAGAGAGAGAGTTTTGAAGGGTGGGACTGGGGGTGGGGGATTTAGGTGCAAGACTTGTAACAGACAGTTCCTTTCTTTTCAAGCCCTTGGGGGCCACAGAGCCAGCCACAAGAAGCTAAAGCTCATGGATACAGACCTTGCTTCCTGCCTGCAGTTATTACCAACCAAGAAACTCAAGATGCATATGTGCCCTGTTTGTGGCCTTGAGTTTGAGATTGGACAAGCGCTAGGAGGACACATGAGGAAGCATAGAGCTGCAGTGCCCACAATATCTAATGTAGCTACTACAAAGTTTCAAGATTTGTGCTTGGATTTGAACTTGACACCCTACGAGAATGATATGAACCTCAACTTAAGGACACCTGTATTAAATTTTTCTATTTGA 474 0.443 MMKRCRVDDEGEVDEMANCLMLLSKIGDPSRERVLKGGTGGGGFRCKTCNRQFLSFQALGGHRASHKKLKLMDTDLASCLQLLPTKKLKMHMCPVCGLEFEIGQALGGHMRKHRAAVPTISNVATTKFQDLCLDLNLTPYENDMNLNLRTPVLNFSI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi656g00013 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Sebi656g00013 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Sebi656g00013 157 SMART c2h2final6 91 113 IPR013087 -
Sebi656g00013 157 SMART c2h2final6 44 66 IPR013087 -
Sebi656g00013 157 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Sebi656g00013 157 Pfam C2H2-type zinc finger 91 115 - -
Sebi656g00013 157 Pfam C2H2-type zinc finger 44 68 - -
Sebi656g00013 157 Gene3D Classic Zinc Finger 42 113 - -
Sebi656g00013 157 PANTHER ZINC FINGER PROTEIN ZAT5 10 142 - -
Sebi656g00013 157 SUPERFAMILY beta-beta-alpha zinc fingers 44 113 IPR036236 -
Sebi656g00013 157 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi656g00013 Sebi-Chr656 344481 344954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi656g00013 2 148 C2H2 Transcription Factor Family AT2G28710 44.848 1.29e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi656g00013 zf-C2H2_6 1.8e-08 CL0361