Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi655g00006 ATGGATGAGGACATGTCAGGCTTTTGCATTAGAAGTGGAAGTGTTCGTGGTAACAACAATAGTGCAAGCACTGGCACTAAGTGTGGGCGTTGGAACCCCACAACTGAACAAGTTAAGCTTTTAACTGAACTGTTCAGTTCTGGACTCCGTACTCCAAGCACTGATCAGATTCAAAAGATCTCTACTCAGCTGAGTTTTTATGGTAAGATTGAGAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAAGCTAGGGAAAGACAAAAGCGTCGTAAGGTTTCCTTTGATGATAATAAGGATGTGATTCGTAGAGAAAATTCCAACTCCAAGTCCATCAATTCTTCTTCACAAAATTTTGCAAAGCTCTATCAGGTTTCAGAGCCAGAGAGGGTGATTGAGACTCTTCAACTCTTCCCTTTGAACTCCTTTGGTGAATCAGAATCAAAGAATTTGAGAGTCCATGCAAATGCAATGTTTTCATACACAATGGGGGAACAAATGGATCACCCTCCATTAGATCTTCGCTTGAGTTTTATGTGA 540 0.4037 MDEDMSGFCIRSGSVRGNNNSASTGTKCGRWNPTTEQVKLLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDNKDVIRRENSNSKSINSSSQNFAKLYQVSEPERVIETLQLFPLNSFGESESKNLRVHANAMFSYTMGEQMDHPPLDLRLSFM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi655g00006 179 Gene3D - 27 95 - -
Sebi655g00006 179 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Sebi655g00006 179 SMART HOX_1 26 93 IPR001356 GO:0003677
Sebi655g00006 179 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 111 IPR044555 GO:0003700|GO:0099402
Sebi655g00006 179 Pfam Homeodomain 28 88 IPR001356 GO:0003677
Sebi655g00006 179 CDD homeodomain 30 90 IPR001356 GO:0003677
Sebi655g00006 179 FunFam WUSCHEL-related homeobox 11 27 95 - -
Sebi655g00006 179 SUPERFAMILY Homeodomain-like 29 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi655g00006 Sebi-Chr655 216993 217912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi655g00006 8 179 Wox Gene Family AT3G11260 55.026 1.88e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Sebi655g00006 Homeodomain 8.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi655g00006 - - pvu:PHAVU_008G226100g 282.337