Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi655g00005 ATGGATGTGATAAAGACGCAGCAAATCTCATCTCGACCGATCGAGAAAGTGGTGGTTCACCCGCTAGTGTTGCTCAGTATCGTCGACAACTACAACAGGGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGTGTCTTGCTCGGTTCCACTTTCAAAGGCACCGTCGACGTTTCCAACAGCTACGCCGCAAAGGAACATGTTGTCGGGTGGTATAGCACTGGTCCAAAACTGCGTGAAAATGACCTTGACATTCATGGGTTATTTAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGACGTTGAACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTACGCCGTTGAAGAGGTTAAAGAGAATGCCACGCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGGGATGTGAAGGATACGACCATTAGCACCCTTGCAACAGAGGTAAGTGGAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTCAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTGTCGTCCCTTATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGAGCAGAAGACTCCAAATCAGTAGCAGTGCCAAGTGCAGCTGCATAA 837 0.4468 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNSYAAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVAVPSAAA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi655g00005 278 SMART pad1_6 16 119 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sebi655g00005 278 Pfam Maintenance of mitochondrial structure and function 143 254 IPR024969 -
Sebi655g00005 278 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 64 IPR000555 GO:0005515|GO:0008233|GO:0008237
Sebi655g00005 278 CDD MPN_RPN7_8 15 264 IPR033858 GO:0005838
Sebi655g00005 278 Gene3D Cytidine Deaminase, domain 2 10 64 - -
Sebi655g00005 278 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 66 - -
Sebi655g00005 278 Gene3D Cytidine Deaminase, domain 2 65 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi655g00005 Sebi-Chr655 189036 192488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi655g00005 19 217 Eukaryotic Initiation Factors Gene Family AT2G39990 26.407 7.56e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi655g00005 K03038 - gmx:100790393 516.153