Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi654g00020 ATGCCTCTTCTGAATGGTCCCTTTGATTCTATTAAGGACATTGTTCATGATAGGAGAGAGGCTTTGAGGCTTAAAGTTCGAGTTGTTAGGGTTTGGGAAATATGCCAAAAAAAAAATCCTGCCAATGTTTTTTCTGTTGAAATGGTCTTGGTAGATTCTGAGGGTGGGAGAATCCAAGCAAGTATAAGGAAAACAATGATCAGAAAATTTAGAAGCTCCATTGTTGAGGGTGGGGTGTATAAGATGATTTATTTTCGACTGGTTGAAAATGGGAGTGAATATAGAGCATGTTCCCATGAGTTTAAGTTGCTGTTTCAGCCAAGGACAAGGATTTTTCCTACTGAGAGTGAGGTGATACCTAGATTTGGTATCCAAGCTAAGAACTCTGAGGATCTTCAAGAGACCAATGATGTTTCGCAGTATATGTTTGATTTCATTGGTCTTTTGACTGCTGTTGGTGAGGAGAAGGAGTTTATCAAATTCGGGAGACCTATTAGGGTGCTTGAAATTAAGCTCACAGATGATAAGGGTGTCATGAAGTGTTCATTATTTGGACACTTCATTGAGATGATGAAAAATTTCTTGGCTAATGGTGTGGATGACCTTGGTATTTTGGTCATTCAGTTTGCAAAGGTGAAGGAATACCTTGGTAAAGTTTCTCTTCATACTGTGAGTAACTCCACAAGGTTACTTTGGAATCCTCAAATTCCTGAGGTTATTTCATTTAAGGACAGTATTATGCAAAGTGGTGTGGACATGCATGGCCCCCTAAAGATGATTGGACACAACTATTATTCACCTACTGAGGAGTTCCTTATCCATTTTCCTAGAAAGTCTATTGAGGATCTTCATATCACTGAAGAGGAGGGGCACTTTATATGCCTTGGAACTGTTGAAGGAATTGTGAAAGATGACCATTGGTGGTATATGGCATGTAAATGCCATAAATCTGTCAACTTAAATGATTCTGGGACTTATTATTGTTCTGGCTGTGTGGCATTTGTTTCGGATGTTACTCCTAGATATAAACTGAAGTTGGAAGTTAGGGACCATAGTGAAACTGCTCATTTCATGTTGTTTGATTTTGATGCTGCTTCATTGTTATCCATGTCATGTGCCTCAATTGTTGGTGATGCGAAGGTTCCTACCCTTGAATATCCCCCTAAGTTGGACATTGTCATTGGCAAGGAGCTTTTGTTTAAGGTTGAAGTCAAGGCTGAGCGTGCCTTTAAATTCGATGATTCTTTTAAGGTTAAGAGGACATATGATGATGATGATATTATTCAAGAGTTCAAGAGTGATGGGTCAATCAGGACCCCTAAGAAGATGAAGCTGAAAGGATCTGTCAATGAGGTGCTTGATGTGGAGGATGAGCTTCCTGGAGATCAAGCAATAGCCCCTGAAATTGTTCCTGTCATTGAACTCTACAATGAAAGTGAAATGAGCCCCCTCTCTCTTGAGGAGTCCTCCAGTGCTGCTGCATGCCTAGCTCCCCAGAAACGTAAGCCTGGGCCACGTGCTGGACGTGGTGGCCTTGCAAAGAAGAGCCTGCACCCAAATGTGTTGAAGGTTGAGAAGGATTAG 1584 0.4097 MPLLNGPFDSIKDIVHDRREALRLKVRVVRVWEICQKKNPANVFSVEMVLVDSEGGRIQASIRKTMIRKFRSSIVEGGVYKMIYFRLVENGSEYRACSHEFKLLFQPRTRIFPTESEVIPRFGIQAKNSEDLQETNDVSQYMFDFIGLLTAVGEEKEFIKFGRPIRVLEIKLTDDKGVMKCSLFGHFIEMMKNFLANGVDDLGILVIQFAKVKEYLGKVSLHTVSNSTRLLWNPQIPEVISFKDSIMQSGVDMHGPLKMIGHNYYSPTEEFLIHFPRKSIEDLHITEEEGHFICLGTVEGIVKDDHWWYMACKCHKSVNLNDSGTYYCSGCVAFVSDVTPRYKLKLEVRDHSETAHFMLFDFDAASLLSMSCASIVGDAKVPTLEYPPKLDIVIGKELLFKVEVKAERAFKFDDSFKVKRTYDDDDIIQEFKSDGSIRTPKKMKLKGSVNEVLDVEDELPGDQAIAPEIVPVIELYNESEMSPLSLEESSSAAACLAPQKRKPGPRAGRGGLAKKSLHPNVLKVEKD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi654g00020 527 CDD RPA1_DBD_C 281 405 IPR047192 -
Sebi654g00020 527 CDD RPA1_DBD_A_like 23 111 - -
Sebi654g00020 527 Pfam Domain of unknown function DUF223 47 115 IPR003871 -
Sebi654g00020 527 MobiDBLite consensus disorder prediction 487 527 - -
Sebi654g00020 527 Pfam Replication factor-A C terminal domain 293 419 IPR013955 -
Sebi654g00020 527 Gene3D - 119 254 IPR012340 -
Sebi654g00020 527 SUPERFAMILY Nucleic acid-binding proteins 138 250 IPR012340 -
Sebi654g00020 527 SUPERFAMILY Nucleic acid-binding proteins 7 115 IPR012340 -
Sebi654g00020 527 CDD RPA1_DBD_B_like 144 245 - -
Sebi654g00020 527 PANTHER OS03G0429900 PROTEIN 22 411 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi654g00020 527 Gene3D - 272 426 IPR012340 -
Sebi654g00020 527 SUPERFAMILY Nucleic acid-binding proteins 276 409 IPR012340 -
Sebi654g00020 527 Gene3D - 8 116 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi654g00020 Sebi-Chr654 511856 514328 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi654g00020 24 421 Core DNA Replication Machinery Family AT5G45400 20.384 1.12e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi654g00020 - - lja:Lj6g3v0884310.1 393.275