Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi654g00016 ATGAAGAGTATGGAAAATGATGACACTGTTGACATTAACAATCAAAATAACTGGTTGGGTTTCTCACTCTCACCCCAAATGAATATAGGTGTTCCTTCACACCCTCATCAGTCTCAAGAGCCTTCCTCTGCTGCTTCAGAAGTGGTTCCAGCAAGCTTTTACCACTCTGCTTCTCTTAATAACTATGGTTTTTATTATGGACTTGAAGCTGAAAATGTTGGGTTGTATTCAACCCTCCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTTTGAGTAGGTCACAAGCACAAGGTTCCAAGCAAAGTCAAACTTCAGATAACAGTCTTCAGGTCCCAAACATGGCTGAGGATGGAGTTCCTGGTCTTAAGAGCTGGGTTGTGAGGAACTTCCCAGCAGCTAGCCATGCACAAGAGTCAAAGATGATTGTTCCTGTGGAGGAAAATGAAGGTGAATCAGGGTCCATTGGATCAATGGCATATGGGGATTTGCAATCTTTGAGCTTGTCCATGAGTCCTAGCTCACAGTCAAGTTGTGTTACAAGTTCTCAGCGTACATCACCTGTTGTCATTGATTCTGTTGCCATGGAAACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAATCCATTGATACCTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAGGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTAACTAACTTTGACATAACAAAATATGATGTGGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCAGTGAACTAGCTAGGAGGAACAGAGAGGTAGAGGGTGGAACTCAGTATATTGATCACAAGCCTTCATCAACATATGAAGACACTCAACAAGCCATTTTAATGCAGAAGACCTGTGAAGGCCAATCAGATCAGTGGAAGATGGTTCTCTATCAATCCTCCCAACAACAACAACTTGACCAGAATCCACCAAGAATTGAACCTGATAGAACTCATCAATCCTTCTCAGTGTCTTTAGATAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAACAAGATGAGAACACATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTAAGCAGCTCAAGAGAAGGTAGCCCAGATAGGACAAGTTTGCCAATGCTCTCTGGAATGCCTTCAACAGCCACCAAACTATTGGCTACTAATCCAAATAGTAGCATGAATTCTTGGGATCCATCACCCCCATTTGAGGCCTACCCTTTCTCTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATTCATAGTCCTCTTTCTTTTTTTCATTTCCTCTCAAGTAAAATTTCAATCTTTTCTTTTCCTTTATGCATGCATGAACAATACGAGAAAAGGGGTGGTGGGTTTGTAG 1824 0.4227 MKSMENDDTVDINNQNNWLGFSLSPQMNIGVPSHPHQSQEPSSAASEVVPASFYHSASLNNYGFYYGLEAENVGLYSTLPIMPLKSDGSLYGMEALSRSQAQGSKQSQTSDNSLQVPNMAEDGVPGLKSWVVRNFPAASHAQESKMIVPVEENEGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSQRTSPVVIDSVAMETKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNREVEGGTQYIDHKPSSTYEDTQQAILMQKTCEGQSDQWKMVLYQSSQQQQLDQNPPRIEPDRTHQSFSVSLDNMFHQEVEESSNKMRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTATKLLATNPNSSMNSWDPSPPFEAYPFSASDASFCCLDRFIVLFLFFISSQVKFQSFLFLYACMNNTRKGVVGL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi654g00016 607 ProSiteProfiles AP2/ERF domain profile. 329 387 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 Coils Coil 294 314 - -
Sebi654g00016 607 CDD AP2 328 389 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 SUPERFAMILY DNA-binding domain 328 388 IPR016177 GO:0003677
Sebi654g00016 607 CDD AP2 229 293 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 MobiDBLite consensus disorder prediction 97 116 - -
Sebi654g00016 607 MobiDBLite consensus disorder prediction 497 527 - -
Sebi654g00016 607 SUPERFAMILY DNA-binding domain 229 295 IPR016177 GO:0003677
Sebi654g00016 607 MobiDBLite consensus disorder prediction 491 527 - -
Sebi654g00016 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 140 473 - -
Sebi654g00016 607 PRINTS Ethylene responsive element binding protein signature 369 389 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 PRINTS Ethylene responsive element binding protein signature 231 242 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 SMART rav1_2 230 299 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 SMART rav1_2 329 393 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 Gene3D AP2/ERF domain 229 295 IPR036955 GO:0003700|GO:0006355
Sebi654g00016 607 Gene3D AP2/ERF domain 329 389 IPR036955 GO:0003700|GO:0006355
Sebi654g00016 607 FunFam AP2-like ethylene-responsive transcription factor 328 389 - -
Sebi654g00016 607 FunFam AP2-like ethylene-responsive transcription factor ANT 229 295 - -
Sebi654g00016 607 ProSiteProfiles AP2/ERF domain profile. 230 293 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 Pfam AP2 domain 330 379 IPR001471 GO:0003700|GO:0006355
Sebi654g00016 607 Pfam AP2 domain 230 285 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi654g00016 Sebi-Chr654 418091 421792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi654g00016 1 411 AP2-EREBP Transcription Factor Family AT4G37750 55.063 3.80e-152 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sebi654g00016 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi654g00016 K09285 - gmx:100792451 736.102