Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi653g00026 ATGAACAGAGGAGCATGGACCCCAGAGGAAGATCAGAAGCTAATCCAGTGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCAGCTAACTCAGGTCTAAACAGGTGTGGAAAGAGTTGCAGGTTGAGATGGTTAAATTATTTGAGACCCAATATCAAGAGGGGCAACATATCACCTGAAGAAGAGGATTTGATTATTAGGCTTCACAGACTGCTGGGAAACAGGTGGTCTTTGATAGCTAAGAGGCTTCCAGGAAGAACAGACAATGAAATTAAAAACTATTGGAATTCTTGTTTGTGCAAAAAAGTTAATCACAAAGAGTTTAAACCAGAAACTTCAATGGCTCAAGAAACACACATGACTCAGAATAATGAGGAAGGGGCAGAGTTAGAGATTGAGAATGAGAATGAGGAGGCCATTGATGGAAGTGGAGACTCAGAAGTTAACTTTGATATGAATGAATTCTTCGATTTCTCCACTGAAAGACCCTATGCGCTGGATTGGGTGAACAATTATCTACAACTTGATGAAATCGATCCATATAGCAACTATAATGAATTGAGTGAGTGGCGTATTTTATGA 588 0.398 MNRGAWTPEEDQKLIQCIEIHGAKRWKTVAANSGLNRCGKSCRLRWLNYLRPNIKRGNISPEEEDLIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNHKEFKPETSMAQETHMTQNNEEGAELEIENENEEAIDGSGDSEVNFDMNEFFDFSTERPYALDWVNNYLQLDEIDPYSNYNELSEWRIL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi653g00026 195 Gene3D - 60 133 - -
Sebi653g00026 195 CDD SANT 60 98 IPR001005 -
Sebi653g00026 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Sebi653g00026 195 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Sebi653g00026 195 FunFam Transcription factor TT2 59 129 - -
Sebi653g00026 195 SMART sant 2 52 IPR001005 -
Sebi653g00026 195 SMART sant 55 103 IPR001005 -
Sebi653g00026 195 PANTHER MYB DOMAIN PROTEIN 55 1 138 - -
Sebi653g00026 195 SUPERFAMILY Homeodomain-like 2 97 IPR009057 -
Sebi653g00026 195 Gene3D - 3 55 - -
Sebi653g00026 195 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Sebi653g00026 195 Pfam Myb-like DNA-binding domain 3 50 IPR001005 -
Sebi653g00026 195 Pfam Myb-like DNA-binding domain 56 100 IPR001005 -
Sebi653g00026 195 FunFam MYB-related transcription factor 2 55 - -
Sebi653g00026 195 CDD SANT 5 50 IPR001005 -
Sebi653g00026 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi653g00026 Sebi-Chr653 502875 503668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi653g00026 1 191 MYB Transcription Factor Family AT3G13540 43.478 4.16e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi653g00026 Myb_DNA-binding 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi653g00026 K09422 - gmx:100816449 282.337