Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi653g00023 ATGACCCGGCGTTGCTCGCATTGCAGCCACAATGGCCACAACTCTAGGACTTGTCCCAACCGTGGAGTCAAGCTCTTCGGGGTCCGCTTGACCGATGGGTCGATCCGGAAGAGTGCCAGCATGGGTAATCTCACCCACTACGTCGGGTCTCACCAACCCGCTTCCAACAATTCGGGTTCTCCCGCTGACACCCCCGAACACGCTGCTCCCGACGGTTACGCCTCCGAGGACTTTGTTCCTGGCTCTTCTTCAACTTCCCGTGAACGAAAGAGAGGTGTCCCGTGGACTGAGGATGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTTGGCAAAGGTGATTGGCGTGGAATTGCAAGAAATTTTGTTGTATCAAGGACACCTACTCAAGTGGCCAGTCATGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAAAGACGTTCCAGTTTGTTTGATATTGCTGTAGATGAATCAGCTGACACGGCCATCGGACAGCAGGACTTGTTGCCATCTAATCAAGTACAGGCTGAAACAGAAGGCAATAACCCATTGCCTGCTCCTCCAGTCCTTGATGAAGAGTGTGAATCCATGGATTCCACAAACTCAAATGATGGGGACTCTGCCTCTTTAAAGCCAGATAGCTCACAATCATCATACCTAACATACTGTTATTCTCCTTTCTGTCCATTTCCTATGCCTTATTGGTCAGCAGGATACAGTCCAGAGCCTACTAAAAGGGAGGCACATGAAGTGCTGAAGCCAACTGCAGTACATTCTAAAAGCCCAATCAATGTTGATGAACTGGTTGGCATGTCAAAACTGAGTTTAGGGGACTCTATTGGTGATTCTGGTCCCTCCTCTCTGTCCCTAAAACTCCTTGAAGGACCTTCTAGACAGTCAGCTTTTCATGCAACTCCAGCATGCAGTGATTCAAACATGAATGGCAGTGCAGTCCATGCAGTTTAA 978 0.4826 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYVGSHQPASNNSGSPADTPEHAAPDGYASEDFVPGSSSTSRERKRGVPWTEDEHRMFLLGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIAVDESADTAIGQQDLLPSNQVQAETEGNNPLPAPPVLDEECESMDSTNSNDGDSASLKPDSSQSSYLTYCYSPFCPFPMPYWSAGYSPEPTKREAHEVLKPTAVHSKSPINVDELVGMSKLSLGDSIGDSGPSSLSLKLLEGPSRQSAFHATPACSDSNMNGSAVHAV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi653g00023 325 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Sebi653g00023 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Sebi653g00023 325 FunFam transcription factor MYB1R1 93 144 - -
Sebi653g00023 325 Gene3D - 93 145 - -
Sebi653g00023 325 MobiDBLite consensus disorder prediction 45 63 - -
Sebi653g00023 325 CDD SANT 94 139 IPR001005 -
Sebi653g00023 325 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Sebi653g00023 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Sebi653g00023 325 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Sebi653g00023 325 MobiDBLite consensus disorder prediction 1 21 - -
Sebi653g00023 325 PANTHER TRANSCRIPTION FACTOR KUA1 3 264 - -
Sebi653g00023 325 SMART sant 91 141 IPR001005 -
Sebi653g00023 325 MobiDBLite consensus disorder prediction 178 216 - -
Sebi653g00023 325 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Sebi653g00023 325 MobiDBLite consensus disorder prediction 45 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi653g00023 Sebi-Chr653 458099 460318 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi653g00023 Myb_DNA-binding 3.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi653g00023 - - ccaj:109807943 541.191