Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi653g00020 ATGACGGTTGAAAAGGAAGACTTGGGTTTGAGTTTAAGCTTGAGCTTCCCTCAAAATCCCCCAAATCCCCTGCATCTCAACCTCATGTCCTCTTCTGCTTACTCCTCTTCTCCTTCTGGGCACAAACCTTCTTGGAACGAGCCTTTCACTTCTTCAGATCGAGATTCAGAAACATGCAGAGGAGGCGAAGGTCGATCATTACTTGGCGGAATCGATGTGAACCGGTTACCTGCAGGGGTTGAGTGTGAAGAAGAAGCAGGAGTTTCATCTCCAAACAGCACGGTTTCAAGCGTGAGTGGTAAACGAAGCGAGAGAGAAACGAACGGTGAAGAGCGTGACATGGAGAGAGATTGTTCCAGAGGGATCAGTGATGAAGAAGACGGTGAAACCTCAAGGAAAAAACTTAGACTCACCAAAGACCAATCCATTATTCTCGAAGAGAGCTTCAAAGAGCACAATACTCTTAACCCCAAACAAAAGATGGCACTGGCAAAGCAGTTAGGCCTTCGAGCACGACAAGTAGAGGTGTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAGCAAACAGAGGTGGACTGTGAGTTTTTGAAAAGGTGCTGTGAGAATCTGACGGAGGAGAACAGGAGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCGCAATTCTACATGCATATGACCCCACCCACAACCCTTACCATGTGCCCTTCTTGTGAGCGTGTTGCTGTTCCACCATCTGCCGTTGATGCTGCCACGCGTCATCATCATATGCCCCCGACTCACCATCGCAGTTTCCCTATTGGGCCCTGGCCCACCGCTGCTTCTATTCCACACAGGCCCTTTGATACCCTCCGTCCCAGATCTTGA 882 0.4921 MTVEKEDLGLSLSLSFPQNPPNPLHLNLMSSSAYSSSPSGHKPSWNEPFTSSDRDSETCRGGEGRSLLGGIDVNRLPAGVECEEEAGVSSPNSTVSSVSGKRSERETNGEERDMERDCSRGISDEEDGETSRKKLRLTKDQSIILEESFKEHNTLNPKQKMALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSAVDAATRHHHMPPTHHRSFPIGPWPTAASIPHRPFDTLRPRS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi653g00020 293 MobiDBLite consensus disorder prediction 1 133 - -
Sebi653g00020 293 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Sebi653g00020 293 MobiDBLite consensus disorder prediction 87 102 - -
Sebi653g00020 293 MobiDBLite consensus disorder prediction 12 52 - -
Sebi653g00020 293 MobiDBLite consensus disorder prediction 103 133 - -
Sebi653g00020 293 FunFam Homeobox-leucine zipper protein 18 118 193 - -
Sebi653g00020 293 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Sebi653g00020 293 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Sebi653g00020 293 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Sebi653g00020 293 Pfam HD-ZIP protein N terminus 3 106 IPR006712 GO:0005634
Sebi653g00020 293 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Sebi653g00020 293 MobiDBLite consensus disorder prediction 257 293 - -
Sebi653g00020 293 Coils Coil 187 224 - -
Sebi653g00020 293 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Sebi653g00020 293 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Sebi653g00020 293 CDD homeodomain 132 189 IPR001356 GO:0003677
Sebi653g00020 293 Gene3D - 136 186 - -
Sebi653g00020 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 259 - -
Sebi653g00020 293 SMART HOX_1 130 192 IPR001356 GO:0003677
Sebi653g00020 293 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi653g00020 Sebi-Chr653 418958 420449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi653g00020 1 293 Homeobox Transcription Factor Family AT4G16780 66.330 7.33e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi653g00020 HD-ZIP_N 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi653g00020 K09338 - vvi:100246436 439.499