Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi653g00017 ATGGCGAACCCTGTTGAAGTTTCTGCACTCAATCGCATAAAGTTGCATCTTCTAGGCGAACTCTCTCCCCTCCCACAACGCACTTCCTGCACTGAACATACCCAAAATAATCTCTGGTTTCAACTTGATGAATCAAACACAACTTCCTCTCAATCTGACTCCCTCTGTTCCCAATCTTTAAGTTCTGATTCTTCCTCATACTTAACTGAACTCCTCGATCTCCCAACCGATTCCATGCCTTTTGAATTTGAGTTCAAACCCCAAATAATTGACCTAGAAACCGAAACGTCGCCGTTTGACTTCAGTTTCTCAAACGCGCAAGCGAAATCGGATCCTGGACCTCAAACCGTTGAGAAGAAACAAACTCAATCGAATCGAAAGCCTTCGTTGCAAATCTCTCTCCCCAAGAAGACCGAGTGGATCCATTTCGGAGAGCCGGAGGTTCAAGAAATGGCGGCAAAGCCTGAGGAGAAGAAGCACTACAGAGGGGTGCGACAGAGGCCATGGGGCAAGTTCGCTGCGGAGATCCGAGACCCGAACAAGCGTGGATCCAGGACGGCGGAAACGGACATTAACCGTGTAAGGGATACTCCGTTAACGCCGTCTAGCTGGAAAGGGTTCTGGGACGCTGATGTAAAGGGTATTTTCACGGTCCCGCCTTTGTCACCGTTATCTCCCCATCCAGCATTGGGTTATCAACAGCTTATGGTTGTCTGA 717 0.4868 MANPVEVSALNRIKLHLLGELSPLPQRTSCTEHTQNNLWFQLDESNTTSSQSDSLCSQSLSSDSSSYLTELLDLPTDSMPFEFEFKPQIIDLETETSPFDFSFSNAQAKSDPGPQTVEKKQTQSNRKPSLQISLPKKTEWIHFGEPEVQEMAAKPEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRTAETDINRVRDTPLTPSSWKGFWDADVKGIFTVPPLSPLSPHPALGYQQLMVV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi653g00017 238 Gene3D AP2/ERF domain 159 194 IPR036955 GO:0003700|GO:0006355
Sebi653g00017 238 Pfam AP2 domain 160 185 IPR001471 GO:0003700|GO:0006355
Sebi653g00017 238 MobiDBLite consensus disorder prediction 102 130 - -
Sebi653g00017 238 SMART rav1_2 160 196 IPR001471 GO:0003700|GO:0006355
Sebi653g00017 238 SUPERFAMILY DNA-binding domain 160 185 IPR016177 GO:0003677
Sebi653g00017 238 PANTHER DNA-BINDING DOMAIN 110 185 IPR044808 GO:0003700|GO:0009873
Sebi653g00017 238 ProSiteProfiles AP2/ERF domain profile. 160 185 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi653g00017 Sebi-Chr653 374434 375324 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi653g00017 1 238 AP2-EREBP Transcription Factor Family AT5G47230 35.350 3.58e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi653g00017 AP2 9.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi653g00017 K09286 - gmx:100808173 161.384