LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi653g00012	ATGGTGGCCATATGGTATAACAAAATACCTGACAAGACCATTGTTTGGAATGCAAATGCAGAGAATCTAGCACCAACAGGATCACAAATTCAGCTCACATCACAAGGGCTCATGCTGACAAGTCCTGAAGGAGAATCCATTTGGTCAACACAACCAAAAGCTGTTGTTTCCTATGGAGCTATGCTTGACACTGGAAACTTTGTTCTTGTAAACAAGAGTTCTGATTTTGTGTGGGAAAGTTTCAAGAATCCCACTGACACGTTGTTGCCTAACCAATCTCTGCAGCTAGATGGCAACCTAACATCTCAAATCACAAAGACCAATTACACAAGTGGAAGGTTCCAACTTTATTTTCAGAATGGTATTGCCATGCTAAGCCCTCTTGCTTGGCCTACTCAATTACGGTACAAATCTTATTATAGTATTGATGCTCCTGATTCTGCTTCACAATTAGTGTTTGATGAATTAGGGAATATTTATGTAGAAACACCAAATGGGACTAGAATCCAACCTCAGGGTCCAAAATGGAGTAACTTAGTTCTTGATCCTAAGGTGTATTACTACAGAGCAACACTTGACTACTATGGAGTTTTCACTCAATATACTCATCCAAGGGACACTAAGGCTCAACAAGGATGGACAATTGTGCGTTATGTTCCTGATAACATTTGCATTGCAATATTCAATGACATGGGTAGTGGTTCATGTGGCTATAATAGTTACTGCTCAATGGAAAATCAGATTCCAACTTGCAAATGCCCTGATGGGTGTTCATTGGTAGATCCAGATTATGAAAAGATGCAACCTTACTCTCAACAGGACTGCCAACAATCTTGCTTGCATGATTGCATGTGTGCTGTTGCCATTTTCAACAATGAAACTTGTTGGAAGAAAAGATTACCTCTTGCTAATGGAAGGGCACAGAGTGGAAGCCAACTGGCCCTTATTAAAACAAGAGTTGCACCTCTAGGTAACAATATTGGTCCTTCCACTTCTCCTGATTCAAAGAAAGAAGATAGAGTTAAGCCAATTCTTCAAGTTTTACTCATTGGCTCCACTGTTATTAATAGTATACTTCTAGCTACTGTAGTTTTGGTTCTTCTCTTAAGGCCCAAAAGAATTGTCCAAGCTGCAAGTCTTTTGGAAACAAATTTACACTCATTTACTTATGAAGCATTGAAAGAGGCCACATGGGGCTTTAGTGAAGAACTAGGCAGGGGTTCATTTGGCATTGTTTACAAAGGCAAGCTAGAAGCAACATTTTATAATGTTGTTGCTGTCAAGAGATTGGACAGATTAGCACAAGAAAGAGAGAAGGAATTTAAGATTGAGTTGAGTGCTATTGGTAAGACCTGCCACAAAAATCTTGTAAGGTTGATTGGATTTTGTGATGAGGGAATCCATAGACTACTAGTCTATGAGTTCATGAGCAATGGCACTCTTGCAGATGCCTTATTTGGACAACCTAAATCCATTTGGAAACTGAGGGTTGGATTTACTTTGGGGATTGCAAGAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATACATTGTGATATAAAACCTCAAAATATACTCATAGATGGCCATTTCACAGCAAAGATCTCTGATTTTGGGTTGGCCAAGTTGTTGTTATCTGACCAGAGTAGAACCAATACCATGATCCGAGGAACTCGAGGATATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACTGTTAAAGTGGATGTTTATAGCTTTGGTGTCATGTTATTGGAAATCATTTGTTGCAGAAAAAGTGTGTTGCCAATGGATTCAGGGGAGGAAGAAAAGGCAATATTAACAGATTGGGCCTATGATTGCTATATGGAAGGGAGAATAGATGCTCTAGTGGAGAACGATGAGGAGGCTTTAAGTGACTATGGCAGGTTGCAACAGTGGATAAAGATAGCAATTTGGTGCATTCAGGAGCACCACGAGACGAGGCCAACAATGAGAATGGTCGTGCTAATGCTAGAAGGCTTGTTGCCCAAGCTCGGAGCGCCTTCATCGCTGCCACTTGTTGAAACCATCGCTTGCCATTTTCAGTCTTCTCAAATCCAGAATCTTATTCCTCCAATGTCTTCTTCCACTATTTGCAACCATAACACAGAATCGATAGCTTCCATTCTTGAATTCCCCCTCTGTGATAAGCCTTTAATCTTCTTCTTCATCTTTGTGATAGGATGTTCTAAGGATGGATGA	2235	0.4045	MVAIWYNKIPDKTIVWNANAENLAPTGSQIQLTSQGLMLTSPEGESIWSTQPKAVVSYGAMLDTGNFVLVNKSSDFVWESFKNPTDTLLPNQSLQLDGNLTSQITKTNYTSGRFQLYFQNGIAMLSPLAWPTQLRYKSYYSIDAPDSASQLVFDELGNIYVETPNGTRIQPQGPKWSNLVLDPKVYYYRATLDYYGVFTQYTHPRDTKAQQGWTIVRYVPDNICIAIFNDMGSGSCGYNSYCSMENQIPTCKCPDGCSLVDPDYEKMQPYSQQDCQQSCLHDCMCAVAIFNNETCWKKRLPLANGRAQSGSQLALIKTRVAPLGNNIGPSTSPDSKKEDRVKPILQVLLIGSTVINSILLATVVLVLLLRPKRIVQAASLLETNLHSFTYEALKEATWGFSEELGRGSFGIVYKGKLEATFYNVVAVKRLDRLAQEREKEFKIELSAIGKTCHKNLVRLIGFCDEGIHRLLVYEFMSNGTLADALFGQPKSIWKLRVGFTLGIARGLVYLHEECDTPIIHCDIKPQNILIDGHFTAKISDFGLAKLLLSDQSRTNTMIRGTRGYVAPEWFKNVPVTVKVDVYSFGVMLLEIICCRKSVLPMDSGEEEKAILTDWAYDCYMEGRIDALVENDEEALSDYGRLQQWIKIAIWCIQEHHETRPTMRMVVLMLEGLLPKLGAPSSLPLVETIACHFQSSQIQNLIPPMSSSTICNHNTESIASILEFPLCDKPLIFFFIFVIGCSKDG	744

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi653g00012	744	SUPERFAMILY	alpha-D-mannose-specific plant lectins	2	120	IPR036426	-
	Sebi653g00012	744	ProSiteProfiles	Bulb-type lectin domain profile.	1	82	IPR001480	-
	Sebi653g00012	744	PIRSF	SRK	258	718	IPR024171	GO:0004674
	Sebi653g00012	744	PIRSF	SRK	1	268	IPR024171	GO:0004674
	Sebi653g00012	744	FunFam	S-receptor-like serine/threonine-protein kinase	370	475	-	-
	Sebi653g00012	744	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	476	675	-	-
	Sebi653g00012	744	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	518	530	IPR008271	GO:0004672\|GO:0006468
	Sebi653g00012	744	Gene3D	-	3	123	-	-
	Sebi653g00012	744	Gene3D	Transferase(Phosphotransferase) domain 1	476	673	-	-
	Sebi653g00012	744	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	2	674	-	-
	Sebi653g00012	744	Pfam	Protein kinase domain	401	666	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi653g00012	744	ProSitePatterns	Protein kinases ATP-binding region signature.	404	428	IPR017441	GO:0005524
	Sebi653g00012	744	Pfam	D-mannose binding lectin	13	99	IPR001480	-
	Sebi653g00012	744	ProSiteProfiles	Protein kinase domain profile.	398	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi653g00012	744	SMART	serkin_6	398	673	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi653g00012	744	FunFam	Serine/threonine-protein kinase	85	227	-	-
	Sebi653g00012	744	SUPERFAMILY	Protein kinase-like (PK-like)	383	670	IPR011009	-
	Sebi653g00012	744	Gene3D	Phosphorylase Kinase; domain 1	366	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi653g00012	Sebi-Chr653	336724	340004	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi653g00012	333	735	Receptor kinase-like Gene Family	AT1G56120	38.005	4.73e-66	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Sebi653g00012		Pkinase	2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi653g00012	-		-	lja:Lj2g3v1989170.1	1085.09