Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi653g00005 ATGCTTATGCTGGTTTATGAGTATGGAAGTCCTCCTAATTCTGTCACTGATATTTTGGCACAGAGAATAAACATGGGGAGAACCAGACAACAATTAAAAGAGGAAGGAAACAACAGGCCCTACACATTAAGGGAACGGAAGTATATAGACTATGCGGAACCTGAATTTAACGACAATGAAAATGTTGAAGACCACATAATATCCAGACCCAACATACCAACTAAAAGAAGAAACACAGCATCATCATCATCATTTATTCCACCACCAACAACAACAGAGACTGTGATGGTGAACTCAGTTGTTGACAATAATGCAAGAGACATTGTGATGTTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGTTAGTGAACTCAGTCGTGGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCACTGCTAAGAAGACCACTACAACAGAACCAAAGAGGCAAAACGGTGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTCTACATGAAGGCTCAAGTCAAGGACAAGACCGTAAGCACATCCAGAAAGACGAGCAAGTCTTCTATAAGCATGATGATAGAAATGAGGGAAGTGCAGCTGCAACGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTACAGCTGTTGCCAGAAAGAAATATCTGTGTGGGCATTTGAAAGACATGCAAATAGTGAGAACGCCGGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTCTGAATATAGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTGCTGCTTTTGTAAGTACTGTAGTCTCACGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCATGTGGATGTTAGCGGGGACGTGCTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAGTAACGAGTTTGCAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCCAGTAGCTTTCTCATTAATGAATGAATGTTTTGAGACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTATACGTTTTCATATATTGATCCCGGAGGTAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACACGCAGGAGACAAGGATTTTGCAGGAATTTAATGATTGTAATTGAATCGTTCCTATGTGTCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATATGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAACTTTGAGAAAAAACTGGCCTCCTATAACATTTTGACGCTCCCTCAGGCTTCAAAACTTTACAAAGACTTGGGTGGTAATCCAAATTGA 1644 0.4148 MLMLVYEYGSPPNSVTDILAQRINMGRTRQQLKEEGNNRPYTLRERKYIDYAEPEFNDNENVEDHIISRPNIPTKRRNTASSSSFIPPPTTTETVMVNSVVDNNARDIVMLNSVVDNIARETVLVNSVVDNIPRHCKGRRSRTAKKTTTTEPKRQNGEVGQTSTIEIDPPLHEGSSQGQDRKHIQKDEQVFYKHDDRNEGSAAATGLRGRITRGGILYSCCQKEISVWAFERHANSENAGQEFCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCLNIERAPRRDWSCPCCFCKYCSLTVYGKQRQLITCLQCDKNFHWQCLKEFSKDHVDVSGDVLYCSQSCKEIYDELERSIAVSNEFANYTWSIIRPQTTLAMTRYFECNAKVPVAFSLMNECFETITDRHTGINVVQNVLYSCRSPDLTRVNFIRFHILIPEVDDAIVCAASIRIHGREVAEMPFIATEGTRRRQGFCRNLMIVIESFLCVLKVQKLVIQSVPDTSDMWKHKFGFKELAGNFEKKLASYNILTLPQASKLYKDLGGNPN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi653g00005 547 PANTHER PHD FINGER PROTEIN 12 60 542 IPR042163 GO:0003714|GO:0045892
Sebi653g00005 547 ProSiteProfiles Zinc finger PHD-type profile. 253 298 IPR019787 -
Sebi653g00005 547 SMART PHD_3 296 348 IPR001965 -
Sebi653g00005 547 SMART PHD_3 255 295 IPR001965 -
Sebi653g00005 547 Pfam Tify domain binding domain 209 238 IPR032308 -
Sebi653g00005 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 305 IPR013083 -
Sebi653g00005 547 SUPERFAMILY FYVE/PHD zinc finger 250 301 IPR011011 -
Sebi653g00005 547 MobiDBLite consensus disorder prediction 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi653g00005 Sebi-Chr653 219605 222246 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi653g00005 180 542 PHD Transcription Factor Family AT4G14920 35.149 2.87e-71 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi653g00005 - - vum:124834316 344.354