Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi653g00003 ATGGGGAGAACCAGACAACAATTAAAAGAGGAAGGAAACAACATGCCCTACACATTAAGGGAACGTAAGTATATAGACTATGCAGAACCTGAATTTAACGACAATGAAAACGTTGAAGACCACGTAGTATCCAGACCCAACATACCAACTAAAAGAAGAAACACAGCATCATCATCATCATTTATTCCACCACCACCAACAACAACAAAGACTGTGATGGTGAACTCAGTTGTTGACAATAATGCAAGAGAGACTGTGATGGTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGTTAGTGAACTCAGTCGTGGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCACTGCTAAGAAGACCACTACAACAGAACAAAAGAGGCAAAACAATGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTTTACATGAAGGCTCAAGTCAAGGACAAGGTTGCAGTGTGGAAAGAGTTTCATCTATACCTAAAGCAGCAACAAGTTCAAGTAAAAAAACCATCTTGTCTTTGTTAATAGACCGTAAGCACATCCAGGAAGACGAGCAAGTCTTCTATAAGCATGATGATAGAAATGAGGGAAGTGCAGCTGCAACGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCAGAAAGAAATGTCTGTGTGGGCATTTGAAAGACATGCAAATAGTGATCACAGAAAACCCTATGAACATATTTACGCCCTACAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTGTGGCTTCATTCATCTGAAAGAGAACGCCGTCAAGAATTCTGCTTTTTTCCCAAGGAAAAACAAGAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCGTTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTCTGAATATGGAGAGGACTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAATTTTCACTGGCAATCTTAAAGGGTCAATTTGGGCGTTTCATATATTGATCCTGGAGGAAGATGATGCAATTGTATGTGCAGCTTCTATAAGGATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACACGCAGGAGACAAGGATTTTGCAGGAATTTAATGATTGTAATTGAATCGTTTCTATGTGTCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATATGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAACTTTGAGAAAGAACATGCCTCCTATAACATTTTGACGCTCCCTCATGGTTCAAAACTATACAAAGACTTGGGTGGTAATCCAAACTGA 1443 0.4151 MGRTRQQLKEEGNNMPYTLRERKYIDYAEPEFNDNENVEDHVVSRPNIPTKRRNTASSSSFIPPPPTTTKTVMVNSVVDNNARETVMVNSVVDNIARETVLVNSVVDNIPRHCKGRRSRTAKKTTTTEQKRQNNEVGQTSTIEIDPPLHEGSSQGQGCSVERVSSIPKAATSSSKKTILSLLIDRKHIQEDEQVFYKHDDRNEGSAAATGLRGRITRGGILCSCCQKEMSVWAFERHANSDHRKPYEHIYALQTQENLQDCLIAVWLHSSERERRQEFCFFPKEKQEDDPCSICANGGDIFRCEHCPSAFHASCLNMERTPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKIFTGNLKGSIWAFHILILEEDDAIVCAASIRIHGREVAEMPFIATEGTRRRQGFCRNLMIVIESFLCVLKVQKLVIQSVPDTSDMWKHKFGFKELAGNFEKEHASYNILTLPHGSKLYKDLGGNPN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi653g00003 480 PANTHER PHD FINGER PROTEIN 12 54 356 IPR042163 GO:0003714|GO:0045892
Sebi653g00003 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 376 IPR013083 -
Sebi653g00003 480 ProSiteProfiles Zinc finger PHD-type profile. 288 333 IPR019787 -
Sebi653g00003 480 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 365 448 IPR016181 -
Sebi653g00003 480 SMART PHD_3 290 331 IPR001965 -
Sebi653g00003 480 Pfam Tify domain binding domain 213 262 IPR032308 -
Sebi653g00003 480 MobiDBLite consensus disorder prediction 114 158 - -
Sebi653g00003 480 MobiDBLite consensus disorder prediction 130 158 - -
Sebi653g00003 480 MobiDBLite consensus disorder prediction 48 68 - -
Sebi653g00003 480 SUPERFAMILY FYVE/PHD zinc finger 285 336 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi653g00003 Sebi-Chr653 171919 174095 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi653g00003 366 475 PHD Transcription Factor Family AT4G14920 46.364 1.19e-23 103