Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi651g00017 ATGGGTGATAATTTTTTAAATGGTTCCATCCCCAAAGAAATAGGGGCACTAAGGAATCTAAGTGAGCTTCACATTCCTAGATGTAATCTCACTGGCCCAATCCCTGTTTCCATAGTGAAGCTGGCCAATTTGTCATACATAGATTTAGGAAATAACCAACTTTCTGGTCACATTCCTCAGCAGATTGGAGAGATGAGGAATTTGAAGTATATATTGTTTAGATCAAATGGACTTTTGGGTCCAATTCCCTCAACAATTGGAATGTTGACAAATCTTGTTGAGCTTGATTTGTCAGATAATGTCCTCTCTGGTACAATTCCTTCACTGAGAAACTTGAGAAATTTAGAACAACTTTACTTCCATAACAACAGTCTCTCTGGGCCTATTCCTGAGGAAATTGGAAAACTCTATTCTCTCACAACAATCCAATTGTTATTCAATAACTTGTCTGGGCCAATACCACCCTCCATAGGAAACTTGGTCAATTTGAATTCTCTTAAACTTGGAAATAACAAACTTTATGGATCAATTCCATCTTCTCTTGGAAACTTGACAAAGCTCTCCATGTTGTCCATGAACCATAACAGACTTTCTGGATCAATTCCTACCACCATGGGAAACTTGGTCAACTTAGAGGGGCTTAACCTTGCAGAAAACAAACTCTCTGGACCTATTCCTTCCTCCTTTGGAAATATGACAAAGCTCAACTTTCTATTACTCTATGACAACAATTTTACTGGTAGGATCCCATCATCAATGAATAACCTTACCAATTTGATAAGCTTGCAACTAAGTACGAATGGTTTCATTGGCCCTTTGCCACAAGAAATTTGCCATGGTCAGTTGCTTCAAAAATTTGCTGCAAATGATAATTATTTCACTGGTCAAGTTCCAAGAAGCTTGAAGAATTGCTCTAGCCTTATTAGACTCAATCTTGTTGAAAACTTCTTGGTTGGAAATATATCAGATGATTTCGGTGTATATCCAAAATTAGACTACATTGATCTTAGTAACAATAATTTTTTTGGCCACCTTTCACCAAATTGGGCCAAGTGTCCTAGTCTTACAAGCCTTTCAATGTCCAATAACAATTTATCAGGTGGTATACCACCAGAGCTAGGCCAAGCACCCAACTTACAAAGACTTCAACTTTCTTCAAATCATCTAAATGGGAAACTTCCAAAAGAACTTGGTAACTTGACCACATTGTTTGAACTCTCCATAAGTGGCAATGAACTTTCAGGCAATATTCCTATAGAAATAGGATCTTTGCTAGAACTTCAACGTTTGGAGCTGGCAGAAAATAATTTAAGAGGTCCAATTCCAAAACAAGTTGGAAAGTTACTCAATTTATTTCAATTGAATTTGAGCAAAAATAATTTCATAGGAAACATTCCATCTGAATTTGGGCAACTGCAATCTCTTCAAAATCTTGATCTCAGTGGGAATTTGTTGAATGGACAAATACCAGAAATGCTTGGAAAGTTGAGAAAATTGGAAACATTGAACCTCTCCCACAATAATCTCTCTGGCACAATTCCATCTGAATTTGAGGATATGTTCAGCTTGACACATGTTGATATATGTAACAATCAATTAGAAGGTCCAATTCCTAACAATCCAGCCTTTCTTAAGGCTTCATTTGATGCATTGAAAAATAACAAAGGCTTGTGTGGTAATGTTTCTAGCTTGGTCATTTGTCAACAGTTGAGTCATAACCAGAAGAAAAAACATGTCATTCTGTTGGCATCATTCCTTACTTTGGGTGCTCTATTGCTAGTAGTAGTGTTTGTGGCTGGACTTTCTTTATGTATTCATTGGCAAAGAGCAAGAAAAATAATCCAAAAGCAGGATAAAGAAGAAGAACATACTCAAGATCATTTTTCCATATTGAGTCATGATGGAAAAATAGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGACAAATATCTCATTGGAAAAGGAGGGTCTGGATCTGTTTACAAGGCTAACTTACCCTGTGGCAAGGTTTTTGCTGTGAAAAAACTTCATGATACAGTTGATGGAGAAATGCCTAAAGCTTTTACTAATGAGGTTCGAGCCTTGACAGAAATCAAACATCGTAACATTGTCAAGTTGTGTGGATTTTGTTCCCATCCACGCTACCCTTTTCTACTTTATGAGTTTGTAGAAGGAGGTAGCTTGGATAAAGTACTAAACATTGATGCACAAGCAATAATGTTTGATTGGGATAAGAGGGTGAATGTTGTCAAAGGTGTGGCAAATGCTTTGTTCCATATGCATCATGGTTGCTCTCCTCCTATAATTCATCGTGACATATCAAGCAAAAATGTTCTTTTAGATTCAGCATATGAAGCTCACATCTCAGACTTTGGAATAGCTAAGATTTTGAATCATGATTCACGTAGTTCAACCACTTTTGCAGGCACCTATGGATATGTTGCACCAGGTTAG 2463 0.3695 MGDNFLNGSIPKEIGALRNLSELHIPRCNLTGPIPVSIVKLANLSYIDLGNNQLSGHIPQQIGEMRNLKYILFRSNGLLGPIPSTIGMLTNLVELDLSDNVLSGTIPSLRNLRNLEQLYFHNNSLSGPIPEEIGKLYSLTTIQLLFNNLSGPIPPSIGNLVNLNSLKLGNNKLYGSIPSSLGNLTKLSMLSMNHNRLSGSIPTTMGNLVNLEGLNLAENKLSGPIPSSFGNMTKLNFLLLYDNNFTGRIPSSMNNLTNLISLQLSTNGFIGPLPQEICHGQLLQKFAANDNYFTGQVPRSLKNCSSLIRLNLVENFLVGNISDDFGVYPKLDYIDLSNNNFFGHLSPNWAKCPSLTSLSMSNNNLSGGIPPELGQAPNLQRLQLSSNHLNGKLPKELGNLTTLFELSISGNELSGNIPIEIGSLLELQRLELAENNLRGPIPKQVGKLLNLFQLNLSKNNFIGNIPSEFGQLQSLQNLDLSGNLLNGQIPEMLGKLRKLETLNLSHNNLSGTIPSEFEDMFSLTHVDICNNQLEGPIPNNPAFLKASFDALKNNKGLCGNVSSLVICQQLSHNQKKKHVILLASFLTLGALLLVVVFVAGLSLCIHWQRARKIIQKQDKEEEHTQDHFSILSHDGKIVYENIIEATEDFDDKYLIGKGGSGSVYKANLPCGKVFAVKKLHDTVDGEMPKAFTNEVRALTEIKHRNIVKLCGFCSHPRYPFLLYEFVEGGSLDKVLNIDAQAIMFDWDKRVNVVKGVANALFHMHHGCSPPIIHRDISSKNVLLDSAYEAHISDFGIAKILNHDSRSSTTFAGTYGYVAPG 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi651g00017 820 Gene3D Transferase(Phosphotransferase) domain 1 726 820 - -
Sebi651g00017 820 Pfam Protein kinase domain 651 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi651g00017 820 SUPERFAMILY Protein kinase-like (PK-like) 630 819 IPR011009 -
Sebi651g00017 820 SUPERFAMILY RNI-like 165 539 - -
Sebi651g00017 820 SUPERFAMILY RNI-like 3 247 - -
Sebi651g00017 820 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 256 571 - -
Sebi651g00017 820 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 236 - -
Sebi651g00017 820 Pfam Leucine Rich Repeat 498 518 IPR001611 GO:0005515
Sebi651g00017 820 ProSiteProfiles Leucine-rich repeat profile. 498 519 IPR001611 GO:0005515
Sebi651g00017 820 SMART LRR_typ_2 424 448 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 160 184 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 256 280 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 208 231 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 112 136 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 472 495 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 377 400 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 496 519 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 352 376 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 41 65 IPR003591 -
Sebi651g00017 820 SMART LRR_typ_2 89 111 IPR003591 -
Sebi651g00017 820 ProSiteProfiles Protein kinase domain profile. 649 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi651g00017 820 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Sebi651g00017 820 PANTHER LEUCINE RICH REPEAT KINASE 2 206 819 - -
Sebi651g00017 820 PRINTS Leucine-rich repeat signature 92 105 - -
Sebi651g00017 820 PRINTS Leucine-rich repeat signature 496 509 - -
Sebi651g00017 820 Gene3D Phosphorylase Kinase; domain 1 609 725 - -
Sebi651g00017 820 ProSitePatterns Tyrosine protein kinases specific active-site signature. 771 783 IPR008266 GO:0004672|GO:0006468
Sebi651g00017 820 Gene3D Ribonuclease Inhibitor 248 569 IPR032675 -
Sebi651g00017 820 Pfam Leucine rich repeat 329 389 IPR001611 GO:0005515
Sebi651g00017 820 FunFam Leucine-rich repeat receptor protein kinase MSP1 612 725 - -
Sebi651g00017 820 Gene3D Ribonuclease Inhibitor 1 247 IPR032675 -
Sebi651g00017 820 SMART LRR_sd22_2 184 210 - -
Sebi651g00017 820 SMART LRR_sd22_2 472 504 - -
Sebi651g00017 820 SMART LRR_sd22_2 41 56 - -
Sebi651g00017 820 SMART LRR_sd22_2 89 117 - -
Sebi651g00017 820 ProSitePatterns Protein kinases ATP-binding region signature. 655 678 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi651g00017 Sebi-Chr651 292869 295331 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi651g00017 4 820 Receptor kinase-like Gene Family AT4G08850 46.739 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi651g00017 Pkinase 8.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi651g00017 - - gmx:100800924 962.6