Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi651g00007 ATGGACATGAACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTTTACCTCTCAACAATTCTGGTCATCGCACTAGTGATGACAGATCAAGGGTATCTCTCTTGAGCAACTCTCAAAATCATAACAACTACACCCACCACCAGCAGCAGGATCACAACAACAACACTGCCAGTGTTAGGGATAAAATCATGGCACATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCAAGTTTGGAAGAGTCATGTGCCAAATGTGAATCTCTGAATGGTGCATCATCAGGAGGAGGAAGGACAGGAAGTGGTTCTATAGGTGAAGATCCAGCACTTGACCAGTTCATGGAGGCTTATTGTGAGATGCTTATCAAGTATGAACAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATTGAGTATCAGCTTAAAGCTCTAGCAGTTTCAACAGACTTTGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATTTGCATGATAACAACCTAGATACTCAAGTTGAAGATAGGGAGCTAAAAGTCCAGCTTTTGCGCAAGTATAGTGGATATCTAGGAAGCCTCAAGAAGGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGGCAGCAGCTACTTGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCACTTGCAGAATCCACAGGCCTAGATCTGAAGCAGATCAACAACTGGTTCATCAATCAAAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAATTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATATCATGTGCAAGCCATTTCCCATGGATGCCATGCCTATGCTTCTTTAA 936 0.4241 MDMNMMNMETNRKFLSLPLNNSGHRTSDDRSRVSLLSNSQNHNNYTHHQQQDHNNNTASVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESLNGASSGGGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIEYQLKALAVSTDFGQSESSSQNEVDLHDNNLDTQVEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENIMCKPFPMDAMPMLL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi651g00007 311 Pfam Homeobox KN domain 235 274 IPR008422 GO:0003677|GO:0006355
Sebi651g00007 311 SUPERFAMILY Homeodomain-like 217 289 IPR009057 -
Sebi651g00007 311 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Sebi651g00007 311 CDD homeodomain 227 279 IPR001356 GO:0003677
Sebi651g00007 311 Pfam KNOX2 domain 117 163 IPR005541 GO:0003677|GO:0005634
Sebi651g00007 311 SMART ELK_2 195 216 IPR005539 GO:0003677
Sebi651g00007 311 ProSiteProfiles 'Homeobox' domain profile. 215 278 IPR001356 GO:0003677
Sebi651g00007 311 Pfam ELK domain 195 216 IPR005539 GO:0003677
Sebi651g00007 311 ProSitePatterns 'Homeobox' domain signature. 253 276 IPR017970 GO:0000981|GO:0006355
Sebi651g00007 311 SMART HOX_1 217 282 IPR001356 GO:0003677
Sebi651g00007 311 ProSiteProfiles ELK domain profile. 195 215 IPR005539 GO:0003677
Sebi651g00007 311 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Sebi651g00007 311 Gene3D - 213 286 - -
Sebi651g00007 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 285 - -
Sebi651g00007 311 SMART KNOX2_2 114 165 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi651g00007 Sebi-Chr651 121924 125753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi651g00007 60 305 Homeobox Transcription Factor Family AT1G62360 65.000 1.56e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi651g00007 KNOX2 8.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi651g00007 - - gmx:100791704 494.582