Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi650g00014 ATGAAGATTCAGTGCAACGTGTGTGAAGCTGCGGAAGCTAAGGTTCTGTGCTGTGCTGATGAGGCGACACTGTGTTGGGAATGTGATGAGAAGGTTCATGCAGCTAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTTTCTAGCTCTTCCTCTCATATTCCTAAATGTGATATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTGGAGGATCGAGCTTTACTTTGCAGAAAATGCGATTTGGCAATACACACTGCAAATGCATATGTCTCCGGTCATCAAAGGTTTCTTCTCACTGGTGTTAGAGTAGGCCTTGAAGCTACTGAGCCTGGTGCTTCATCATCTTCTTTGAAATCAGATTCTGGGGAGAAAGTTTCTGATACAAAATCATCTTCTGTCTCTAGAAAGGTTTCCACAATGCCTCAGTCATCAGATTACAATGAAGTTTTACCCACTGAAGTTGGAGGAGGTGGGGAGTTTCCACCAGCTAAGGTGTCATATGGTGGTGGTTCTACAGCTGGAAACATGTCACAGTGGACGCTTGATGAATTTCTTGGCCTAAACGAGTTAAATCAGAATTATAATTACATGGAAGAATCATCAAGGCCTGATAGTGGTAAGCTTGGGGATTCTGATTCTCCTGTATTAAGATCCAGTGAAGAGGAAATGGAGGATGATGACTACTTACGACGCGATACAGATTCATCATGGACAGTTCCTCAGATACCTTCCCCTCCTACAGCTTCTGGGTTAAACTGGCCAAAAGAACCTCAATATTCATCTAATAGTGCTTTATTTGTTCCTGACATTTGCTTTTCTAGCATGCAAAGGCCACACAAAAGTATATTTTCAAGACCAAGGAGGCATCTTTAA 876 0.4247 MKIQCNVCEAAEAKVLCCADEATLCWECDEKVHAANKLASKHQRVPLSSSSSHIPKCDICQEALGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKSDSGEKVSDTKSSSVSRKVSTMPQSSDYNEVLPTEVGGGGEFPPAKVSYGGGSTAGNMSQWTLDEFLGLNELNQNYNYMEESSRPDSGKLGDSDSPVLRSSEEEMEDDDYLRRDTDSSWTVPQIPSPPTASGLNWPKEPQYSSNSALFVPDICFSSMQRPHKSIFSRPRRHL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi650g00014 291 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Sebi650g00014 291 SMART bboxneu5 52 99 IPR000315 GO:0008270
Sebi650g00014 291 SMART bboxneu5 4 47 IPR000315 GO:0008270
Sebi650g00014 291 CDD Bbox1_BBX-like 5 47 - -
Sebi650g00014 291 MobiDBLite consensus disorder prediction 198 256 - -
Sebi650g00014 291 Pfam B-box zinc finger 55 95 IPR000315 GO:0008270
Sebi650g00014 291 MobiDBLite consensus disorder prediction 110 150 - -
Sebi650g00014 291 FunFam B-box zinc finger protein 22 1 93 - -
Sebi650g00014 291 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Sebi650g00014 291 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi650g00014 291 MobiDBLite consensus disorder prediction 235 256 - -
Sebi650g00014 291 MobiDBLite consensus disorder prediction 110 167 - -
Sebi650g00014 291 CDD Bbox1_BBX-like 56 99 - -
Sebi650g00014 291 Gene3D Classic Zinc Finger 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi650g00014 Sebi-Chr650 460760 464013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi650g00014 1 289 C2C2-CO-like Transcription Factor Family AT1G78600 47.866 3.19e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi650g00014 zf-B_box 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi650g00014 - - gmx:100790959 476.863