Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi650g00005 ATGGCTGATTCTGATCTATATGAGACTGCTCGTGTTTCCCCTATTTCTCTGACTTATTACGGATTTTGTCTAGAAAATGGAGAGTACACAGTTAAACTCTACTTTGCAGAGATAATGTTCACTGATGATGACACGTTTAGTAGCCTTGGGAGACGTATATTTGATATCTACATACAGGGAGAGCCAGTACATACGGATTTCAATATTGCAAATGAAGCCCAAGGAGTTGGAAAGGAAAAAATAATGCAATTTCCAGCTTATGTAAGTAATAATTCATTAGAGATCCGCTTCCATTGGGCTGGGAAAGGAACAAGAGCTATCCCATATCCATCAGTATATGGCCCTCTTGTATCAGCTATATCTGTCAGTCAAAGGGCTATTGTTGGAATAGTGGTTGCAGCTGTTTTTATTGCCATCCTAGTTATACTTTGGTGGGGAGGTTGCATAGGAATAAAGAGTTCATTAACTAAAGCAGAACTAAAGGACTTGGATCGACAAACTGGTTTATTCACCTTACGTCAAATCAAAACAGCAACAAATAACTTCAATATTTCCAATAAAATTGGAGAAGGTCGTGAAGAATCTTGTTTAAAATTGAATTGGCCAACAAGGCACAAGATCTGTGTTGGTATTGCAAGAGGATTGGCTTTCTTGCATGAAGAATCGAGATTGAAAATTGTTCATAGGGATATTAAGGCCACTAATGTGTTGTTAGACAAAGACCTAAACCCAAAGATATCAGATTTTGGTTTGGCTAAGCTTGATGAGGAGGACAATACACATATAAGTACTCGAATAGCTGGGACCTATGGATATATGGCTCCAGAATATGCAATGCATGGTTATTTGACTGAAAAAGCATATGTATATAGTTTTGGAATTGTTGCCCTGGAAATCGTTAGTGGAAAGAGCAACACCATCCACCGGGCAAAGGAAAAATCTTTGTATCTTCTTGATTGGGCACATTTATTGAAAGAAAAAGGTAACCTAATGGAGCTAGTTGATCATAAGTTGGGTTTAAATTTCAATGAAGAGGAGGTATTGGTGATGATCAATGTTGCTCTTTTATGCACCAATGCCACTTCAAACCTTAGGCCTAGTATGTCATTAGTGGTAAGCATGCTTGAAGGCAAAATTGTGGTTCCAGAATTTGTTTCTGATCCAAATGAGGTAATGGATGAAATGAAGTTAGAGGCAATGCGACAGTATTAA 1212 0.3787 MADSDLYETARVSPISLTYYGFCLENGEYTVKLYFAEIMFTDDDTFSSLGRRIFDIYIQGEPVHTDFNIANEAQGVGKEKIMQFPAYVSNNSLEIRFHWAGKGTRAIPYPSVYGPLVSAISVSQRAIVGIVVAAVFIAILVILWWGGCIGIKSSLTKAELKDLDRQTGLFTLRQIKTATNNFNISNKIGEGREESCLKLNWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKAYVYSFGIVALEIVSGKSNTIHRAKEKSLYLLDWAHLLKEKGNLMELVDHKLGLNFNEEEVLVMINVALLCTNATSNLRPSMSLVVSMLEGKIVVPEFVSDPNEVMDEMKLEAMRQY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi650g00005 403 SUPERFAMILY Protein kinase-like (PK-like) 194 387 IPR011009 -
Sebi650g00005 403 FunFam Putative LRR receptor-like serine/threonine-protein kinase 180 387 - -
Sebi650g00005 403 Pfam Protein tyrosine and serine/threonine kinase 197 374 IPR001245 GO:0004672|GO:0006468
Sebi650g00005 403 Gene3D - 1 127 - -
Sebi650g00005 403 SMART serkin_6 133 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi650g00005 403 Gene3D Transferase(Phosphotransferase) domain 1 186 383 - -
Sebi650g00005 403 Pfam Malectin domain 2 120 IPR021720 -
Sebi650g00005 403 ProSiteProfiles Protein kinase domain profile. 1 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi650g00005 403 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 194 401 - -
Sebi650g00005 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi650g00005 Sebi-Chr650 187118 191854 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi650g00005 191 403 Receptor kinase-like Gene Family AT1G07650 66.822 4.18e-92 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi650g00005 PK_Tyr_Ser-Thr 1.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi650g00005 - - pavi:110763499 400.979