Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi650g00003 ATGTTCACTGATGATAACACATATAGCATCCTAGGGAGGCGTGTATTTGATGTCTACATTCAGAGAAATCGTGTACTAAAGGATTTCAACATTGCAAAGGAAGCACAAGGAGTTGGCAAGGAACTTATAAAACAATTTCATGTTCATGTGACTACTAATGACTTAGAGATTCGTTTCTATTGGGCTGGCAAAGGGACATCATACATCCCATATAAATCAATAAACGGTCCTCTTATATCAGCTATATCTGTTGAGTATGACTCTACAAGTGGCAGCATATCTACAGGGTTTATTTTTGCAATTGCAGCTGCAGTAGTGATTGTTGTCATCTTGATTATTATCGTGATACTTTGGTGGGGAGGTTGTATAGGGAAAAGGCATTTATTAGTAAAAGGGCTAAAGGATTTAGATCTGCATATTGGTTTATTTACCTTACGTCAAATAAAAGAAGCAACAAATAACTTCGATATTTCTAATAAGATCGGCGAAGGTGGCTTTGGTCCTGTTTATAAGGGCTTTCTGTCAAATGGCACAGTAATAGCAGTCAAACAACTTTCACCTAAATCAAAGCAAGGAAACCGTGAGTTCATAAATGAGATAGGCATGATCTCAACTTTGCAGCATCCTTATCTAGTTAAACTTTATGGTTGTTGTATCGAGGGAGATCAATTGTTGGTGGTATATGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTGGTCCAGAAGAATGTCATTTAAAATTGAATTGGCCAACAAGGCAGAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCTTTCCTGCATGAAGAATCAAGACTGAAAGTTGTTCACAGGGACTTAAAGGCAGCTAATGTGTTGCTTGACAAAGATCTGAGCCCAAAGATATCTGATTTTGGTTTGGCGAAACTCAATGAGGAGGACAATACTCACATAAGCACGAGAATAGCTGGGACCTATGGATATATGGCTCCTGAGTATGCAATGCATGGTTACTTGACTGAGAAAGCAGATGTCTATAGTTTTGGAATTATTTCCTTGGAACTTGCACGTCTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATCCAAGGTTGGGTGTCAATTTCAATGAAAATGAGGTAATAACGATTGTCAAAGTGGCCCTCCTATGCACCAATGCCAATTCAAATCTTAGGCCCTCCATGTCTTCAGTGCTAAGCATGCTTGAGGGCAGAACTGTGGTTCCAGAATTTGTTCCACATCCAAGTGAGGTAAGGGATGAGATTAAATTGGAAGCAATGAGAGAGTTTTACGGTCAACCTCAATCCTTTCCATCTTGA 1329 0.3875 MFTDDNTYSILGRRVFDVYIQRNRVLKDFNIAKEAQGVGKELIKQFHVHVTTNDLEIRFYWAGKGTSYIPYKSINGPLISAISVEYDSTSGSISTGFIFAIAAAVVIVVILIIIVILWWGGCIGKRHLLVKGLKDLDLHIGLFTLRQIKEATNNFDISNKIGEGGFGPVYKGFLSNGTVIAVKQLSPKSKQGNREFINEIGMISTLQHPYLVKLYGCCIEGDQLLVVYEYMENNSLAHALFGPEECHLKLNWPTRQKICVGIARGLAFLHEESRLKVVHRDLKAANVLLDKDLSPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIISLELARLLKEKGNLMELVDPRLGVNFNENEVITIVKVALLCTNANSNLRPSMSSVLSMLEGRTVVPEFVPHPSEVRDEIKLEAMREFYGQPQSFPS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi650g00003 442 Gene3D - 1 87 - -
Sebi650g00003 442 CDD STKc_IRAK 161 407 - -
Sebi650g00003 442 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 124 230 - -
Sebi650g00003 442 FunFam Putative LRR receptor-like serine/threonine-protein kinase 231 352 - -
Sebi650g00003 442 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 436 - -
Sebi650g00003 442 ProSiteProfiles Protein kinase domain profile. 155 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi650g00003 442 SMART serkin_6 155 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi650g00003 442 SUPERFAMILY Protein kinase-like (PK-like) 138 423 IPR011009 -
Sebi650g00003 442 Gene3D Phosphorylase Kinase; domain 1 129 230 - -
Sebi650g00003 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Sebi650g00003 442 Pfam Malectin domain 9 82 IPR021720 -
Sebi650g00003 442 Pfam Protein tyrosine and serine/threonine kinase 157 404 IPR001245 GO:0004672|GO:0006468
Sebi650g00003 442 Gene3D Transferase(Phosphotransferase) domain 1 231 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi650g00003 Sebi-Chr650 87020 89903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi650g00003 1 434 Receptor kinase-like Gene Family AT1G53420 57.143 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi650g00003 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi650g00003 - - gmx:100791136 636.721