Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi64g00019 ATGGCAGTAGCATCTGAGTCCTCTAGCATCTCTGCCACCTCAGCAACCATTTCCCACAAAGTTGATGAAGAAGTCAGCAAAATGGAGGTCGAGGAGGAGGGGAAAATGAAGGAGAAAGACATCAAATCATCTGAACAAGATCAGGTTTCAAATTCTAATAATTCTCACATGGTTCTTGATTTTGTGAAACTCTCCACAGATGATTCTGTTCCTAGTGGGTCCAAGTTATTGCAGGAACTTGATTTTTTCAGTCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAACAACAACAATGAAGGGAGAGAAGAGAACACAGAGGAAAAGTCAAACTCAGAGTCAAGGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCACACAAACAACAACGTGCACTAGCAAAGCGTCGCCAAGAGATGCAAAACAATGTTGGTGCTTTGGGGCACCCTCATCACTTTCCTTATTACCCTTATCCTAGTCTTTCCACCACACGCCCCTTTCATGGATCATATAATTGGTCACTTGGGGTTAGGATGGAGTCCATGATTCACAAGCCATCCTATTCAAATTCCCCACTTGGATTCAGATATGGTCATGGTCTTGGTGCTATGTGGCCATCAATTCAAGGGATCCTAAACCCTTCTTCTCATGATAGATTAAGGATTGAGGGTGCTGGGATTCTAGGTGTAAGTTCTACTTCAAGGATAGAAGATGATGATGGTGGGAGAACTATTGGAGCCATTCTCCAATTGGGAGAGTCCTCTGCAAATGCTGCTACAAGGTCAAACTTAGCCATAAACAAACCAAATATAGCCCCTAAAGGCGATCATCATTCCAACAGTGAAGAACCCTCCAACTCTGAATCCTCTGGGCTTGATCTATCACTAAAGCTTTAA 942 0.4278 MAVASESSSISATSATISHKVDEEVSKMEVEEEGKMKEKDIKSSEQDQVSNSNNSHMVLDFVKLSTDDSVPSGSKLLQELDFFSPENKGSSSCWANSSNNNNEGREENTEEKSNSESRTFSCNFCDRKFSSSQALGGHQNAHKQQRALAKRRQEMQNNVGALGHPHHFPYYPYPSLSTTRPFHGSYNWSLGVRMESMIHKPSYSNSPLGFRYGHGLGAMWPSIQGILNPSSHDRLRIEGAGILGVSSTSRIEDDDGGRTIGAILQLGESSANAATRSNLAINKPNIAPKGDHHSNSEEPSNSESSGLDLSLKL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi64g00019 313 MobiDBLite consensus disorder prediction 299 313 - -
Sebi64g00019 313 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Sebi64g00019 313 Gene3D Classic Zinc Finger 97 162 - -
Sebi64g00019 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Sebi64g00019 313 MobiDBLite consensus disorder prediction 282 313 - -
Sebi64g00019 313 MobiDBLite consensus disorder prediction 20 45 - -
Sebi64g00019 313 MobiDBLite consensus disorder prediction 85 103 - -
Sebi64g00019 313 MobiDBLite consensus disorder prediction 1 19 - -
Sebi64g00019 313 SUPERFAMILY beta-beta-alpha zinc fingers 117 147 IPR036236 -
Sebi64g00019 313 MobiDBLite consensus disorder prediction 85 117 - -
Sebi64g00019 313 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 313 IPR044246 GO:0009788
Sebi64g00019 313 MobiDBLite consensus disorder prediction 1 55 - -
Sebi64g00019 313 Coils Coil 138 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi64g00019 Sebi-Chr64 340480 341421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi64g00019 113 230 C2H2 Transcription Factor Family AT5G10970 45.000 3.55e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi64g00019 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi64g00019 - - gmx:102663393 237.654