Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi647g00010 ATGACCACCCAACAACTTGCCCTGCTGGTGTTGGTGTTAATGATTGCAATATTAGTAAGGGTGGGAGGAGCAGCTGGTAACGCCCTACCTGGTTGCATAGACACATGTGGAAGCGTTTCAATTCCATATCCATTTGGCGTAGGCAAGTCTTCCAAAACAGGTCATAACTGTTTCTTGGAAAAATGGTCGAGCCTTACCTGCAGTAATAACACTTTATATAACGGGAATGTCCGAGTTTTAAACATAGGCCTCCTCGAAGGCCAATTGGAAATGAAGTTTTATGTCTCACAGCTTTGCAATGATACCGAAGATGGAGAATTTAATCCGCCCTCCCTTAGCACTGCTTCTTTTACCATCTCTAGCAAAGAAAACCAGTTCATTAGTGTTGGTCGCAACACCTACGGCTATCTCAATAGCTTTGGCGACGGGGAAGAGTATTCAACGGGGTGCTTAACAAGATTTAGTAAGTTACCTCATACGGTGAAAGATGGAGAGTGTTCGGGGATAGGGTGTTGTGAGGTGGATATTCCTTCTCAAATGAAGAATATCACTATACAGACATATAAATTTATGAATTTCAGTGGCTGTAGCTATTCCTTTGTTGCCAAACGAGGCTCATATAACTTTTCTGTTAGTCATTTGGACAAGCTGCCCTTTGATGAGTTTCCTATGGTTGTTGATTGGACTGTTGGAAAGGAAAATGAGAGATGTGAATTTTTCAAGGATGGACAGAAAAGTGCCTGCATGAGTAATAGCTATTGTGACGATGCTGACACTAGTTATGGATACCGATGCAGATGTAAAACTGGTTATGATGGAAACCCATACCATCCCAATGGTTGCAAAGGTGTATGTGCTGGACTTATAGCTCTATTGGGTGCTTCCTGGTTATACCTAATCTATCAAAAAAGGAAACTCATAAAACAAAAAGAGATATTTTTCCAGCAAAATGGTGGTTTTATTTTGCAACGAAGACTCTCTGAAAGAGAAGACTCCCACCAAATTGCTCAAATTTTCACAGCAGAAGAGTTGAAAAATGCCACCAACAACTACAACGAGAGCTTAATCATTGGAAAAGGAGGTTTTGGAACAGTTTTCAAAGGATTTCTTACTAATAATAGGATTGTTGCTGTGAAGAAGTCCAAAGTAGTTGACCAAAACCAAGCTGAGCAATTCATCAACGAAGTGATTATTCTATCCCAAATCAATCACAGGAATGTGGTGAAACTCTTGGGTTGTTGTTTAGACACTGAAGTCCCATTATTGGTTTACGAATTTGTTAACAATAGTACCCTTTATGATCACTTACACAATGAAAGCAAGATAGGTAATCTCACTTGGAAGACTCGTCTAAGAATAGCTATAGAGACAGCTGGAGCATTATCATATTTGCATTCAGATGCTTCAATAACCATTATCCATAGGGATGTGAAAAGTTCCAACATTCTATTGGATGACAATTACACTGCCAAGGTGTCTGATTTTGGAGCTTCAAAGTTGGTTCCACTTGATCAAGTTGAATTAGCCACAATGGTACAAGGGACTTTTGGTTACTTGGACCCTGAGTACATGCAAACAAGTAGGCTCACTGAGAAGAGTGATGTCTATAGCTTTGGAGTAGTGCTTGTAGAACTGCTAACAGGTCAGAAAGCAGTTTCATTTCAGAGGCCAGAAGAAGAAAGAAGTCTTGCCTTGCATTTTCTGTCTTACTTGGAAAATGGTAGATTGTTTGAAATTCTTGATTTTGGTCTTTTGAATGAAGAAAATAGGGAGGAGATTCAGGAAGTTGCTGTTCTTGCAAGTAAGTGCATGGGACTTAAAGGGGATGAGAGGCCTAGCATGAAGCAAGTGGAAATTGAGCTGAAGGGAATAAGGAAAATAGAGAAGCACCCATGGACCAATATAGACCTGAATTTGGAGGAGTCTCAACACTTACTTCCTGAGGTATCTGGCATTTATAGGCATGGTGATAGCACCAACTATGGAAATACTGAGTATGACAGCTTGAGGGACCATGTACAAGTTGCCTTTGAAATTGCACGTTAA 2046 0.4022 MTTQQLALLVLVLMIAILVRVGGAAGNALPGCIDTCGSVSIPYPFGVGKSSKTGHNCFLEKWSSLTCSNNTLYNGNVRVLNIGLLEGQLEMKFYVSQLCNDTEDGEFNPPSLSTASFTISSKENQFISVGRNTYGYLNSFGDGEEYSTGCLTRFSKLPHTVKDGECSGIGCCEVDIPSQMKNITIQTYKFMNFSGCSYSFVAKRGSYNFSVSHLDKLPFDEFPMVVDWTVGKENERCEFFKDGQKSACMSNSYCDDADTSYGYRCRCKTGYDGNPYHPNGCKGVCAGLIALLGASWLYLIYQKRKLIKQKEIFFQQNGGFILQRRLSEREDSHQIAQIFTAEELKNATNNYNESLIIGKGGFGTVFKGFLTNNRIVAVKKSKVVDQNQAEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVNNSTLYDHLHNESKIGNLTWKTRLRIAIETAGALSYLHSDASITIIHRDVKSSNILLDDNYTAKVSDFGASKLVPLDQVELATMVQGTFGYLDPEYMQTSRLTEKSDVYSFGVVLVELLTGQKAVSFQRPEEERSLALHFLSYLENGRLFEILDFGLLNEENREEIQEVAVLASKCMGLKGDERPSMKQVEIELKGIRKIEKHPWTNIDLNLEESQHLLPEVSGIYRHGDSTNYGNTEYDSLRDHVQVAFEIAR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi647g00010 681 SMART serkin_6 351 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi647g00010 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Sebi647g00010 681 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 627 IPR045274 GO:0007166
Sebi647g00010 681 FunFam Wall-associated receptor kinase 2 427 644 - -
Sebi647g00010 681 Pfam Protein kinase domain 352 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi647g00010 681 SUPERFAMILY Protein kinase-like (PK-like) 333 618 IPR011009 -
Sebi647g00010 681 FunFam Wall-associated receptor kinase 2 321 426 - -
Sebi647g00010 681 Gene3D Phosphorylase Kinase; domain 1 320 426 - -
Sebi647g00010 681 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Sebi647g00010 681 Gene3D Transferase(Phosphotransferase) domain 1 427 642 - -
Sebi647g00010 681 CDD STKc_IRAK 357 624 - -
Sebi647g00010 681 ProSiteProfiles Protein kinase domain profile. 351 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi647g00010 Sebi-Chr647 256355 261191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi647g00010 9 681 Receptor kinase-like Gene Family AT1G21250 40.830 2.86e-172 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi647g00010 Pkinase 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi647g00010 - - gmx:106795446 770