Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi646g00021 ATGGCGCAATCCAACAAGCAGCTTCCCTGCGACGCCGACGGCCTTTGCATGCTCTGCAAACTCAAACCCTCTCCTTCTGAGACTCTCACTTGCCGGACCTGCATCACTCCCTGGCACGCTCCTTGTCTCCCCATTCCTCCTTCCTCTCTCCTTGATTGGGACTGCCCTGACTGTTCCCACCCGGAAACTGACCATGTCGCCGCTCCTGCTCCCTCCGCCGGCGACCTCGTCTCCGCCATCCGTGCCATTCAGTCCGACACTTCACTCACTGAGAAAGAAAAGGCGAAAAAACGTCAAGAGCTTGTTGGTGGATCCACAAAACCACCTGCAGAAACCAGTAACACTGTCAAGAACGGATTGCTTGACATTCTTGACGGAAGCTTGAACTGTTCCTTCTGTATGCAGTTACCTGAGAGACCTGTCACGACGCCTTGTGGTCACAATTTCTGTTTGAAATGCTTTGAAAAATGGATCGGCCAAGGTAAACGTAGTTGCGCGAAATGCCGTAGGGAAATTCCTGCTAAGATGTCGAGCAATCCGCGAATCAATTCGCAGTTAGCCATTGCCATTCGATTCGCCAGAATGGCGAGATCTGGGAATTCTAGTGTTACCACAAACAAGGTTTACCACTTTACTCACAATCAGAATCGTCCAGACAAGGCTTTCACTACTGAGAGAGCTAAGAAGCCTGGGAAGGCCAATGCTTGCAGTGGAAAGATATTTGTTACTGTTCCTCCTGATCATTTTGGACCTATCCCTGCTGAGAATGACCCTACAAGGGACCGTGGTGTTCTTGTTGGGGACACTTGGGAGGATCGGATGGAATGTAGACAGTGGGGTGCTCATCTTCCTCATGTTGCTGGCATTGCTGGCCAGAGTACTTATGGTGCTCAGTCTGTGGCCCTTTCTGGTGGTTACATTGATGATGAGGATCATGGTGAGTGGTTCCTTTATACTGGTAGTGGTGGGAGAGATCTCAGTGGTAACAAAAGGACCAACAAACAGCAATCCTTTGATCAGAAATTTGAGAATATGAATGAGGCACTGAGATTAAGTTGCCGAAAAGGTTATCCAGTTAGGGTTGTCAGGTCCCACAAGGAGAAACGATCTTCTTATGCACCGGATGCTGGGGTGCGATATGATGGAGTTTATAGAATTGAGAAATGCTGGCGGAAAAATGGAGTACATGGTTGCAAGGTTTGCAGATATTTGTTTGTGAGATGTGACAATGAGCCAGCCCCATGGACTACTGCTGAACGTGGAGATCGACCCCGCCCACTGCCTAAAATTAAAGAGTTGAAGGATGCAATTGACATAACTGAAAGGAAGGAATCTCCATCATGGGATTATGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACAAAGCAGAAAAACGGTTAATGTGGTAAATCCTGAGGATGGGACTCATGTAAGGGTCAAACGGAAAGTTAAAGATGTGTCTGTCAAAGAAAGGCTTTTGAGAGAGTTTGGCTGCCAAATCTGTCACAAGGTGATGTCTTTTCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTCTGGAAGGAGCCTTTTCTGGCCAAAGTTTCATCAGAAAGAGGGCATGTGAAAGTGGACGTACTTTAAGGGCACAGAAGAACATTATGAAATGCCCATCATGTTCAATTGACATAGCTGAGTTTCTTCAGAATCCACAGGTTAACAGAGAAATGATGGGTATTATAGAATCACTCCAGCACCAGGTTGAACAGATGGAGGAAAATTCTGAAGAGTTGAGTGATAAAAATGATGAAAATATCAAGAATCTGCATGATGAGGAGGCTGAAGTTTCAAAACCCTGTGATTCAAGTGAAAAAGTTTTGGAGGAAATCAATGACAACGATCTGAATCGGCCACTCAAGCGGAGGAAAAGTTCTGGTGGCACGGTTGTGGTGAACATAGAGGAACATACTGATGAGGCTGAACTAGGAGACGCAGTAAAGGTTTGTAATTAA 2010 0.4657 MAQSNKQLPCDADGLCMLCKLKPSPSETLTCRTCITPWHAPCLPIPPSSLLDWDCPDCSHPETDHVAAPAPSAGDLVSAIRAIQSDTSLTEKEKAKKRQELVGGSTKPPAETSNTVKNGLLDILDGSLNCSFCMQLPERPVTTPCGHNFCLKCFEKWIGQGKRSCAKCRREIPAKMSSNPRINSQLAIAIRFARMARSGNSSVTTNKVYHFTHNQNRPDKAFTTERAKKPGKANACSGKIFVTVPPDHFGPIPAENDPTRDRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSTYGAQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKQQSFDQKFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPDAGVRYDGVYRIEKCWRKNGVHGCKVCRYLFVRCDNEPAPWTTAERGDRPRPLPKIKELKDAIDITERKESPSWDYDEEKGCWLWKKPPPQSRKTVNVVNPEDGTHVRVKRKVKDVSVKERLLREFGCQICHKVMSFPLTTPCAHNFCKACLEGAFSGQSFIRKRACESGRTLRAQKNIMKCPSCSIDIAEFLQNPQVNREMMGIIESLQHQVEQMEENSEELSDKNDENIKNLHDEEAEVSKPCDSSEKVLEEINDNDLNRPLKRRKSSGGTVVVNIEEHTDEAELGDAVKVCN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi646g00021 669 SUPERFAMILY RING/U-box 495 584 - -
Sebi646g00021 669 SMART ring_2 502 559 IPR001841 -
Sebi646g00021 669 SMART ring_2 130 168 IPR001841 -
Sebi646g00021 669 ProSitePatterns Zinc finger RING-type signature. 517 526 IPR017907 -
Sebi646g00021 669 SMART G9a_1 245 411 IPR003105 -
Sebi646g00021 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 612 IPR013083 -
Sebi646g00021 669 Pfam RING-type zinc-finger 502 557 IPR027370 -
Sebi646g00021 669 Pfam SAD/SRA domain 262 410 IPR003105 -
Sebi646g00021 669 Pfam Zinc finger, C3HC4 type (RING finger) 130 168 IPR018957 GO:0046872
Sebi646g00021 669 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 230 425 - -
Sebi646g00021 669 Coils Coil 573 614 - -
Sebi646g00021 669 SUPERFAMILY FYVE/PHD zinc finger 5 61 IPR011011 -
Sebi646g00021 669 Gene3D - 230 426 IPR036987 -
Sebi646g00021 669 ProSiteProfiles YDG domain profile. 259 407 IPR003105 -
Sebi646g00021 669 ProSitePatterns Zinc finger PHD-type signature. 16 58 IPR019786 -
Sebi646g00021 669 MobiDBLite consensus disorder prediction 89 116 - -
Sebi646g00021 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Sebi646g00021 669 SUPERFAMILY PUA domain-like 233 427 IPR015947 -
Sebi646g00021 669 CDD RING-HC_ORTHRUS_rpt1 127 173 IPR047498 -
Sebi646g00021 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 194 IPR013083 -
Sebi646g00021 669 ProSiteProfiles Zinc finger RING-type profile. 502 560 IPR001841 -
Sebi646g00021 669 SUPERFAMILY RING/U-box 122 176 - -
Sebi646g00021 669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 596 IPR045134 -
Sebi646g00021 669 ProSiteProfiles Zinc finger RING-type profile. 130 169 IPR001841 -
Sebi646g00021 669 SMART PHD_3 15 59 IPR001965 -
Sebi646g00021 669 FunFam Predicted protein 92 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi646g00021 Sebi-Chr646 234972 238206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi646g00021 7 591 C2H2 Transcription Factor Family AT5G39550 62.814 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi646g00021 K10638 - gmx:100786796 1031.17