Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi646g00007 ATGGATAATCGTTGGAGAAATGGAAGGATCAAAAAGTTCGCAAGTCACAAGTTGCAGTTGGCGGCGTTTCGTTGGTTTGATAATTTGATGGAAAAGAGAGGCGCAGTCTCAGATGCTGAGCTTCAAACTGTGTTGGATCCTACTCAGACAAAGATATGTGGTGATGGAAATGAAAAAGGTTCCTTGATTCCTCAATCCAGAAGACCTACCCTCTCCTCGTTGCAAATACCAGCATGGTCATTGGATATTGCATTATCTTCTTTTGCAAAGACGGATGGTCCTTCACCTTCAATTTCACTGTCAAGTCCTGGTTCAACTGCTAGAGGACTTCCCCCAAGGCCAAATTCAGCTAAAGCCAGGCCTTCCATGAAAAGTTTACTTCCTCAGAGGAGCTTAAGGACAAAAGCTTCTCCCCGGGATGTTGAAAGGACAGTTCTTATAGTTCCTGATACTCCCTCGTCAGATGCTCCTTTGGAGAAACCTTCCACTTCAAGGTCCCTGTCTCTTAATAGTAGGGTCATAACACCCCCATCAACAAAAGCTGTACACTCATTACCAGTTACTCCATTTGCAACTTCAGGTGCAGAGAATGTGCATGGAAAACGTCTGGGGTGTGATTCTGGTTTTAGTACAATTGAAATTCAGCAGCATATAACTCGATCATTATCGGTTCCAGTTAATGGCAAAGGCACTAAGTTAAGGCGTACAGATTCTAGGTGCTTGATTCGTGTGATTTCAGCACAACCACATCTTGAAACTGTTGTTGCAACCTCAACTGATGATGCTTCGGTTCCAAAGACCGCTGTTGAAGATGCTAGTGAGGATATTCCAGAGGAAGAAGCAGTGTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGAAATACTCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGAGTGTGCTGTAAAGTGGTTTAGTATTAAAGGAAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCCTCAAACTGCTTCTAGGCAGCCATCAAATGTGCCACAACAGAGAGAAGTAGCATATTACAGGCATGATCTGGCAGGATGTACCGGTACTTATCTTGGTCAGCATGCTTGCTTACTTTTGCTTCCTAGAGCAACTACTGATGGAGAGCAAATAGGCAGATTCAGTCTTCCAATGAGAATGTTAACAGTAACAGGACAGACAGAGCAGCAGCGCCGTGATCATCATGTACAACACGAGCAACAAAGAGCAAGAGTATCATCAATGACGGTAGCTACTCTTTCAACAGTCGATACAATACAACTGGTTCAGGGCATTCTTCCCCAATTATGA 1368 0.4357 MDNRWRNGRIKKFASHKLQLAAFRWFDNLMEKRGAVSDAELQTVLDPTQTKICGDGNEKGSLIPQSRRPTLSSLQIPAWSLDIALSSFAKTDGPSPSISLSSPGSTARGLPPRPNSAKARPSMKSLLPQRSLRTKASPRDVERTVLIVPDTPSSDAPLEKPSTSRSLSLNSRVITPPSTKAVHSLPVTPFATSGAENVHGKRLGCDSGFSTIEIQQHITRSLSVPVNGKGTKLRRTDSRCLIRVISAQPHLETVVATSTDDASVPKTAVEDASEDIPEEEAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQTASRQPSNVPQQREVAYYRHDLAGCTGTYLGQHACLLLLPRATTDGEQIGRFSLPMRMLTVTGQTEQQRRDHHVQHEQQRARVSSMTVATLSTVDTIQLVQGILPQL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi646g00007 455 CDD RING_CH-C4HC3_MARCH 283 331 - -
Sebi646g00007 455 Pfam RING-variant domain 283 330 IPR011016 GO:0008270
Sebi646g00007 455 SMART ringv_2 282 331 IPR011016 GO:0008270
Sebi646g00007 455 PANTHER OS02G0165000 PROTEIN 57 367 - -
Sebi646g00007 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 338 IPR013083 -
Sebi646g00007 455 MobiDBLite consensus disorder prediction 91 169 - -
Sebi646g00007 455 MobiDBLite consensus disorder prediction 91 109 - -
Sebi646g00007 455 ProSiteProfiles Zinc finger RING-CH-type profile. 275 337 IPR011016 GO:0008270
Sebi646g00007 455 SUPERFAMILY RING/U-box 279 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi646g00007 Sebi-Chr646 96693 101652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi646g00007 260 337 C3H Transcription Factor Family AT2G37950 41.975 4.61e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi646g00007 - - gmx:100789461 475.322